RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 COX7A2LO14548 114 aa12.03□□□□□ -0.48
PTCD3-204ENST00000418628 HIGD2BQ4VC39 106 aa12.03□□□□□ -0.48
PTCD3-204ENST00000418628 LINC00242Q5T6M2 205 aa12.03□□□□□ -0.48
PTCD3-204ENST00000418628 LINC00614P0C842 121 aa12.02□□□□□ -0.49
PTCD3-204ENST00000418628 ZC2HC1BQ5TFG8 222 aa12.02□□□□□ -0.49
PTCD3-204ENST00000418628 Q6ZN92 141 aa12.02□□□□□ -0.49
PTCD3-204ENST00000418628 PAPPA-AS1Q5QFB9 102 aa12.01□□□□□ -0.49
PTCD3-204ENST00000418628 COX6A2Q02221 97 aa12□□□□□ -0.49
PTCD3-204ENST00000418628 C5orf38Q86SI9 138 aa12□□□□□ -0.49
PTCD3-204ENST00000418628 C2orf88Q9BSF0 95 aa12□□□□□ -0.49
PTCD3-204ENST00000418628 VCX2Q9H322 139 aa12□□□□□ -0.49
PTCD3-204ENST00000418628 TRGC2P03986 189 aa11.99□□□□□ -0.49
PTCD3-204ENST00000418628 SDIM1Q6ZPB5 146 aa11.99□□□□□ -0.49
PTCD3-204ENST00000418628 SCGB3A1Q96QR1 104 aa11.99□□□□□ -0.49
PTCD3-204ENST00000418628 FAT1Q14517 4588 aa11.98□□□□□ -0.49
PTCD3-204ENST00000418628 A0A087WZ39 114 aa11.98□□□□□ -0.49
PTCD3-204ENST00000418628 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.98□□□□□ -0.49
PTCD3-204ENST00000418628 SCO1O75880 301 aa11.98□□□□□ -0.49
PTCD3-204ENST00000418628 RAB5BP61020 215 aa11.98□□□□□ -0.49
PTCD3-204ENST00000418628 IGHV3-64A0A075B6Q5 118 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 HBDP02042 147 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 MALP21145 153 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 CIRBPQ14011 172 aaKnown RBP11.97□□□□□ -0.49
PTCD3-204ENST00000418628 PDZD11Q5EBL8 140 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 Q8N1X5 172 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 OR10D4PQ8NGN7 298 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 LINC00526Q96FQ7 95 aa11.97□□□□□ -0.49
PTCD3-204ENST00000418628 VPS13BQ7Z7G8 4022 aa11.96□□□□□ -0.49
PTCD3-204ENST00000418628 APOMO95445 188 aa11.96□□□□□ -0.49
PTCD3-204ENST00000418628 HAMPP81172 84 aa11.96□□□□□ -0.49
PTCD3-204ENST00000418628 LINC01561Q8N1V8 128 aa11.96□□□□□ -0.49
PTCD3-204ENST00000418628 CHCHD1Q96BP2 118 aaKnown RBP11.96□□□□□ -0.49
PTCD3-204ENST00000418628 LINC00310P59036 64 aa11.95□□□□□ -0.5
PTCD3-204ENST00000418628 SCXQ7RTU7 201 aa11.95□□□□□ -0.5
PTCD3-204ENST00000418628 C2orf48Q96LS8 159 aa11.95□□□□□ -0.5
PTCD3-204ENST00000418628 IGLV4-69A0A075B6H9 119 aa11.94□□□□□ -0.5
PTCD3-204ENST00000418628 PANO1I0J062 215 aa11.94□□□□□ -0.5
PTCD3-204ENST00000418628 ZNF561-AS1K7EIQ3 104 aa11.94□□□□□ -0.5
PTCD3-204ENST00000418628 PMCHL1Q16048 86 aa11.94□□□□□ -0.5
PTCD3-204ENST00000418628 CHAC1Q9BUX1 264 aa11.94□□□□□ -0.5
PTCD3-204ENST00000418628 KRTAP4-5Q9BYR2 181 aa11.94□□□□□ -0.5
PTCD3-204ENST00000418628 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.94□□□□□ -0.5
PTCD3-204ENST00000418628 IGLV5-45A0A087WSX0 123 aa11.93□□□□□ -0.5
PTCD3-204ENST00000418628 HERVK_113P63121 156 aa11.93□□□□□ -0.5
PTCD3-204ENST00000418628 SPAG11BQ08648 103 aa11.93□□□□□ -0.5
PTCD3-204ENST00000418628 ORAOV1Q8WV07 137 aa11.93□□□□□ -0.5
PTCD3-204ENST00000418628 CARD19Q96LW7 228 aa11.93□□□□□ -0.5
PTCD3-204ENST00000418628 CST9LQ9H4G1 147 aa11.93□□□□□ -0.5
PTCD3-204ENST00000418628 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.92□□□□□ -0.5
PTCD3-204ENST00000418628 SEC11AP67812 179 aa11.92□□□□□ -0.5
PTCD3-204ENST00000418628 SYCNQ0VAF6 134 aa11.92□□□□□ -0.5
PTCD3-204ENST00000418628 KIAA0087Q14695 138 aa11.92□□□□□ -0.5
PTCD3-204ENST00000418628 PMVKQ15126 192 aa11.92□□□□□ -0.5
PTCD3-204ENST00000418628 ABCA13Q86UQ4 5058 aa11.92□□□□□ -0.5
PTCD3-204ENST00000418628 A0A0J9YXV3 536 aa11.91□□□□□ -0.5
PTCD3-204ENST00000418628 Q6ZRU5 148 aa11.91□□□□□ -0.5
PTCD3-204ENST00000418628 TINCRA0A1B0GVN0 87 aa11.9□□□□□ -0.5
PTCD3-204ENST00000418628 F8WDY8 70 aa11.9□□□□□ -0.5
PTCD3-204ENST00000418628 CIRBP-AS1Q8TBR5 109 aa11.9□□□□□ -0.5
PTCD3-204ENST00000418628 CDKN2A-AS1Q9UH64 79 aa11.9□□□□□ -0.5
PTCD3-204ENST00000418628 ATP5LO75964 103 aa11.89□□□□□ -0.51
PTCD3-204ENST00000418628 SPACA4Q8TDM5 124 aa11.89□□□□□ -0.51
PTCD3-204ENST00000418628 CAMK2N2Q96S95 79 aa11.88□□□□□ -0.51
PTCD3-204ENST00000418628 PCLOQ9Y6V0 5065 aa11.87□□□□□ -0.51
PTCD3-204ENST00000418628 CHTF8P0CG12 524 aa11.87□□□□□ -0.51
PTCD3-204ENST00000418628 IGLC3P0DOY3 106 aa11.87□□□□□ -0.51
PTCD3-204ENST00000418628 RNF151Q2KHN1 245 aa11.87□□□□□ -0.51
PTCD3-204ENST00000418628 BAGE3Q86Y29 109 aa11.87□□□□□ -0.51
PTCD3-204ENST00000418628 MRPL35Q9NZE8 188 aaKnown RBP11.87□□□□□ -0.51
PTCD3-204ENST00000418628 A0A096LNI7 61 aa11.86□□□□□ -0.51
PTCD3-204ENST00000418628 SERF1AO75920 110 aa11.86□□□□□ -0.51
PTCD3-204ENST00000418628 GEMIN7Q9H840 131 aaKnown RBP11.86□□□□□ -0.51
PTCD3-204ENST00000418628 SMIM1B2RUZ4 78 aa11.85□□□□□ -0.51
PTCD3-204ENST00000418628 ATP6V1G1O75348 118 aa11.85□□□□□ -0.51
PTCD3-204ENST00000418628 HSBP1O75506 76 aa11.85□□□□□ -0.51
PTCD3-204ENST00000418628 SMR3BP02814 79 aaPredicted RBP11.85□□□□□ -0.51
PTCD3-204ENST00000418628 PKIGQ9Y2B9 76 aa11.85□□□□□ -0.51
PTCD3-204ENST00000418628 NDUFA1O15239 70 aa11.84□□□□□ -0.51
PTCD3-204ENST00000418628 C10orf25Q5T742 122 aa11.84□□□□□ -0.51
PTCD3-204ENST00000418628 Q5VSD8 79 aa11.84□□□□□ -0.51
PTCD3-204ENST00000418628 Q8IZM0 81 aa11.84□□□□□ -0.51
PTCD3-204ENST00000418628 FAM19A2Q8N3H0 131 aa11.84□□□□□ -0.51
PTCD3-204ENST00000418628 SRRM2Q9UQ35 2752 aaKnown RBP11.83□□□□□ -0.52
PTCD3-204ENST00000418628 NUPR1O60356 82 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BKO60814 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BJP06899 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 S100A1P23297 94 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BOP23527 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BBP33778 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BDP58876 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BCP62807 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST2H2BEQ16778 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.83□□□□□ -0.52
PTCD3-204ENST00000418628 LINC00469Q8N7U9 141 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BHQ93079 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BNQ99877 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 HIST1H2BMQ99879 126 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 PLAC8Q9NZF1 115 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 C6orf48Q9UBA6 75 aa11.83□□□□□ -0.52
PTCD3-204ENST00000418628 TRAV12-1A0A0B4J245 112 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms