RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 CLPSL2Q6UWE3 100 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 LINC00336Q6ZUF6 198 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 APLNQ9ULZ1 77 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 LINC00588Q9Y4M8 146 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 HECTD4Q9Y4D8 3996 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 IGLV5-45A0A087WSX0 123 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 TSTD3H0UI37 97 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 IGHV3-30P01768 117 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 IGHV3-33P01772 117 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 IGHV3-30-3P0DP02 117 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 IGHV3-30-5P0DP03 117 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 LINC01556Q5JQF7 62 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 LINC00242Q5T6M2 205 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 LINC00269Q8N2A0 174 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 LINC00469Q8N7U9 141 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 UPK3BQ9BT76 320 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 PRO1933Q9H354 126 aa7.65□□□□□ -1.18
LINC00539-201ENST00000411525 LINC00959A0A1B0GUT2 108 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 TMEM223A0PJW6 202 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 E9PLD3 99 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 DNAH10OSP0CZ25 163 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 REG3AQ06141 175 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 SS18Q15532 418 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 KLK12Q9UKR0 248 aa7.64□□□□□ -1.19
LINC00539-201ENST00000411525 H3BRM9 83 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 CCL25O15444 150 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 CRPP02741 224 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 NMUP48645 174 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 COX6A2Q02221 97 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 PRR34Q9NV39 138 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 CDKN2A-AS1Q9UH64 79 aa7.63□□□□□ -1.19
LINC00539-201ENST00000411525 HERC2O95714 4834 aa7.62□□□□□ -1.19
LINC00539-201ENST00000411525 IGKV2D-26A0A0A0MRZ7 120 aa7.62□□□□□ -1.19
LINC00539-201ENST00000411525 SIVA1O15304 175 aa7.62□□□□□ -1.19
LINC00539-201ENST00000411525 DNAH10Q8IVF4 4471 aa7.62□□□□□ -1.19
LINC00539-201ENST00000411525 DNAH6Q9C0G6 4158 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 COX8AP10176 69 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 UBE2DNLQ8IWF7 75 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 UBE2WQ96B02 151 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 C14orf144Q96I85 54 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 UQCR10Q9UDW1 63 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 PCLOQ9Y6V0 5065 aa7.61□□□□□ -1.19
LINC00539-201ENST00000411525 IGHV3-64A0A075B6Q5 118 aa7.6□□□□□ -1.19
LINC00539-201ENST00000411525 IGHV3OR16-9A0A0B4J2B5 98 aa7.6□□□□□ -1.19
LINC00539-201ENST00000411525 LEPROTO15243 131 aa7.6□□□□□ -1.19
LINC00539-201ENST00000411525 SPINK8P0C7L1 97 aa7.6□□□□□ -1.19
LINC00539-201ENST00000411525 XCL1P47992 114 aa7.6□□□□□ -1.19
LINC00539-201ENST00000411525 ENHOQ6UWT2 76 aa7.6□□□□□ -1.19
LINC00539-201ENST00000411525 CHCHD10Q8WYQ3 142 aaPredicted RBP7.6□□□□□ -1.19
LINC00539-201ENST00000411525 VPS13DQ5THJ4 4388 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 IGLV10-54A0A075B6I4 117 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 TRAV8-4A0A0B4J246 113 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 IGHV1-58A0A0C4DH39 117 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 PCP4L1A6NKN8 68 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 SMIM1B2RUZ4 78 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 MIAQ16674 131 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 SLC25A34Q6PIV7 304 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 CD164L2Q6UWJ8 174 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 PCP2Q8IVA1 136 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 PLEKHB2Q96CS7 222 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 MIEN1Q9BRT3 115 aa7.59□□□□□ -1.19
LINC00539-201ENST00000411525 A0A087WZ39 114 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 TRAV8-3A0A0A6YYJ7 113 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 IGLV5-39A0A0G2JS06 123 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 J3QQQ9 107 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 DLEU1O43261 78 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 LGALS3P17931 250 aaKnown RBP7.58□□□□□ -1.2
LINC00539-201ENST00000411525 TSPEAR-AS2P59090 65 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 BOD1L2Q8IYS8 172 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 Q9H8V8 135 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 TP73-AS1Q9UF72 201 aa7.58□□□□□ -1.2
LINC00539-201ENST00000411525 DDTP30046 118 aa7.57□□□□□ -1.2
LINC00539-201ENST00000411525 C5orf38Q86SI9 138 aa7.57□□□□□ -1.2
LINC00539-201ENST00000411525 LINC01561Q8N1V8 128 aa7.57□□□□□ -1.2
LINC00539-201ENST00000411525 C10orf126Q8N4M7 172 aa7.57□□□□□ -1.2
LINC00539-201ENST00000411525 TTTY13Q9BZ97 58 aa7.57□□□□□ -1.2
LINC00539-201ENST00000411525 GAGE12HA6NDE8 117 aa7.56□□□□□ -1.2
LINC00539-201ENST00000411525 IBA57-AS1B1ANH7 110 aa7.56□□□□□ -1.2
LINC00539-201ENST00000411525 COX7A2LO14548 114 aa7.56□□□□□ -1.2
LINC00539-201ENST00000411525 HNRNPA3P51991 378 aaKnown RBP7.56□□□□□ -1.2
LINC00539-201ENST00000411525 FOXI1Q12951 378 aa7.56□□□□□ -1.2
LINC00539-201ENST00000411525 MAPKAPK5-AS1Q8N8E1 139 aa7.56□□□□□ -1.2
LINC00539-201ENST00000411525 KIAA1109Q2LD37 5005 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 MYMXA0A1B0GTQ4 84 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 A0A1B0GVY2 172 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 ZNF815PA8K554 130 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 K7EP13 123 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 C1orf43Q9BWL3 253 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 PKHD1P08F94 4074 aa7.55□□□□□ -1.2
LINC00539-201ENST00000411525 C2orf91Q6ZV80 131 aa7.54□□□□□ -1.2
LINC00539-201ENST00000411525 Q9HAA7 133 aa7.54□□□□□ -1.2
LINC00539-201ENST00000411525 IGKV2D-24A0A075B6R9 120 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 M0R2N4 97 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 RTL8CO15255 209 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 MALP21145 153 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 KRTAP26-1Q6PEX3 210 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 COX7B2Q8TF08 81 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 RMI2Q96E14 147 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 NDUFA12Q9UI09 145 aa7.53□□□□□ -1.2
LINC00539-201ENST00000411525 NDUFA1O15239 70 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms