RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KRTAP10-2P60368 255 aa19.27■□□□□ 0.68
USP42-202ENST00000404008 FAM19A3Q7Z5A8 133 aa19.27■□□□□ 0.68
USP42-202ENST00000404008 C14orf177Q52M58 125 aa19.26■□□□□ 0.67
USP42-202ENST00000404008 IGHV3OR16-9A0A0B4J2B5 98 aa19.25■□□□□ 0.67
USP42-202ENST00000404008 COX7A2LO14548 114 aa19.25■□□□□ 0.67
USP42-202ENST00000404008 COA6Q5JTJ3 125 aaKnown RBP19.25■□□□□ 0.67
USP42-202ENST00000404008 C15orf56Q8N910 161 aa19.25■□□□□ 0.67
USP42-202ENST00000404008 COX6A2Q02221 97 aa19.24■□□□□ 0.67
USP42-202ENST00000404008 CFAP161Q6P656 301 aa19.22■□□□□ 0.67
USP42-202ENST00000404008 C5orf38Q86SI9 138 aa19.22■□□□□ 0.67
USP42-202ENST00000404008 IFI27L1Q96BM0 104 aa19.22■□□□□ 0.67
USP42-202ENST00000404008 LEPROTL1O95214 131 aa19.21■□□□□ 0.67
USP42-202ENST00000404008 PRSS1P07477 247 aa19.21■□□□□ 0.67
USP42-202ENST00000404008 NDUFA6P56556 154 aa19.21■□□□□ 0.67
USP42-202ENST00000404008 IGLV2-33A0A075B6J2 118 aaPredicted RBP19.2■□□□□ 0.66
USP42-202ENST00000404008 A0A0J9YXV3 536 aa19.2■□□□□ 0.66
USP42-202ENST00000404008 FUSP35637 526 aaKnown RBP eCLIP19.2■□□□□ 0.66
USP42-202ENST00000404008 SEC11AP67812 179 aa19.2■□□□□ 0.66
USP42-202ENST00000404008 NTN5Q8WTR8 489 aaPredicted RBP19.2■□□□□ 0.66
USP42-202ENST00000404008 PGPEP1Q9NXJ5 209 aa19.2■□□□□ 0.66
USP42-202ENST00000404008 DNAH5Q8TE73 4624 aa19.2■□□□□ 0.66
USP42-202ENST00000404008 IGHV1-58A0A0C4DH39 117 aa19.19■□□□□ 0.66
USP42-202ENST00000404008 MALP21145 153 aa19.19■□□□□ 0.66
USP42-202ENST00000404008 HERVK_113P63121 156 aa19.19■□□□□ 0.66
USP42-202ENST00000404008 hDV102S1A0JD36 115 aa19.18■□□□□ 0.66
USP42-202ENST00000404008 CDPF1Q6NVV7 123 aa19.18■□□□□ 0.66
USP42-202ENST00000404008 A0A087WZ39 114 aa19.17■□□□□ 0.66
USP42-202ENST00000404008 GVQW2A0A096LPI5 108 aaPredicted RBP19.17■□□□□ 0.66
USP42-202ENST00000404008 TINCRA0A1B0GVN0 87 aa19.17■□□□□ 0.66
USP42-202ENST00000404008 GEMIN7Q9H840 131 aaKnown RBP19.17■□□□□ 0.66
USP42-202ENST00000404008 HSPB8Q9UJY1 196 aa19.17■□□□□ 0.66
USP42-202ENST00000404008 FABP4P15090 132 aa19.16■□□□□ 0.66
USP42-202ENST00000404008 HIGD2BQ4VC39 106 aa19.15■□□□□ 0.66
USP42-202ENST00000404008 IGLV5-52A0A0A0MRZ9 124 aa19.14■□□□□ 0.65
USP42-202ENST00000404008 TRAV12-1A0A0B4J245 112 aa19.14■□□□□ 0.65
USP42-202ENST00000404008 APOMO95445 188 aa19.14■□□□□ 0.65
USP42-202ENST00000404008 CDKN2A-AS1Q9UH64 79 aa19.13■□□□□ 0.65
USP42-202ENST00000404008 IGLC3P0DOY3 106 aa19.12■□□□□ 0.65
USP42-202ENST00000404008 IGLV4-69A0A075B6H9 119 aa19.11■□□□□ 0.65
USP42-202ENST00000404008 IGLV5-45A0A087WSX0 123 aa19.11■□□□□ 0.65
USP42-202ENST00000404008 LINC01561Q8N1V8 128 aa19.11■□□□□ 0.65
USP42-202ENST00000404008 IGHV3-64A0A075B6Q5 118 aa19.1■□□□□ 0.65
USP42-202ENST00000404008 C16orf90A8MZG2 172 aa19.1■□□□□ 0.65
USP42-202ENST00000404008 PACRGQ96M98 296 aaPredicted RBP19.1■□□□□ 0.65
USP42-202ENST00000404008 LINC00469Q8N7U9 141 aa19.09■□□□□ 0.65
USP42-202ENST00000404008 OR10D4PQ8NGN7 298 aa19.09■□□□□ 0.65
USP42-202ENST00000404008 CHAC1Q9BUX1 264 aa19.09■□□□□ 0.65
USP42-202ENST00000404008 CHTOPQ9Y3Y2 248 aaKnown RBP19.09■□□□□ 0.65
USP42-202ENST00000404008 SLPIP03973 132 aa19.08■□□□□ 0.65
USP42-202ENST00000404008 CNBPP62633 177 aaKnown RBP19.08■□□□□ 0.65
USP42-202ENST00000404008 DYNC1H1Q14204 4646 aaKnown RBP19.07■□□□□ 0.64
USP42-202ENST00000404008 ORAOV1Q8WV07 137 aa19.07■□□□□ 0.64
USP42-202ENST00000404008 LINC00526Q96FQ7 95 aa19.07■□□□□ 0.64
USP42-202ENST00000404008 H0Y8G0 127 aa19.06■□□□□ 0.64
USP42-202ENST00000404008 ZNF561-AS1K7EIQ3 104 aa19.06■□□□□ 0.64
USP42-202ENST00000404008 SPAG11BQ08648 103 aa19.05■□□□□ 0.64
USP42-202ENST00000404008 MAP1LC3CQ9BXW4 147 aa19.05■□□□□ 0.64
USP42-202ENST00000404008 MRPL35Q9NZE8 188 aaKnown RBP19.05■□□□□ 0.64
USP42-202ENST00000404008 C11orf86A6NJI1 115 aa19.04■□□□□ 0.64
USP42-202ENST00000404008 F8VRH5 84 aa19.04■□□□□ 0.64
USP42-202ENST00000404008 GCSHP23434 173 aa19.04■□□□□ 0.64
USP42-202ENST00000404008 ODF1Q14990 250 aa19.04■□□□□ 0.64
USP42-202ENST00000404008 S100A6P06703 90 aa19.02■□□□□ 0.64
USP42-202ENST00000404008 ZNF22P17026 224 aaPredicted RBP19.02■□□□□ 0.64
USP42-202ENST00000404008 TRAV16A0A0A6YYK6 109 aaPredicted RBP19.01■□□□□ 0.63
USP42-202ENST00000404008 SMIM1B2RUZ4 78 aa19.01■□□□□ 0.63
USP42-202ENST00000404008 LRP1BQ9NZR2 4599 aa19■□□□□ 0.63
USP42-202ENST00000404008 H3BRM9 83 aa19■□□□□ 0.63
USP42-202ENST00000404008 LINC01620Q4KN68 170 aa19■□□□□ 0.63
USP42-202ENST00000404008 C9orf163Q8N9P6 203 aa19■□□□□ 0.63
USP42-202ENST00000404008 C2orf48Q96LS8 159 aa19■□□□□ 0.63
USP42-202ENST00000404008 KIAA0087Q14695 138 aa18.99■□□□□ 0.63
USP42-202ENST00000404008 HIST3H2BBQ8N257 126 aa18.99■□□□□ 0.63
USP42-202ENST00000404008 SPINK8P0C7L1 97 aa18.98■□□□□ 0.63
USP42-202ENST00000404008 KRTAP10-1P60331 282 aa18.98■□□□□ 0.63
USP42-202ENST00000404008 SYS1-DBNDD2H3BUS1 97 aa18.97■□□□□ 0.63
USP42-202ENST00000404008 SYCNQ0VAF6 134 aa18.96■□□□□ 0.63
USP42-202ENST00000404008 TMEM170BQ5T4T1 132 aa18.96■□□□□ 0.63
USP42-202ENST00000404008 CAMK2N2Q96S95 79 aa18.96■□□□□ 0.63
USP42-202ENST00000404008 CARD19Q96LW7 228 aa18.95■□□□□ 0.62
USP42-202ENST00000404008 F8WDY8 70 aa18.94■□□□□ 0.62
USP42-202ENST00000404008 Q8IZM0 81 aa18.94■□□□□ 0.62
USP42-202ENST00000404008 TOMM7Q9P0U1 55 aa18.94■□□□□ 0.62
USP42-202ENST00000404008 Q6ZRU5 148 aa18.93■□□□□ 0.62
USP42-202ENST00000404008 PRSS2P07478 247 aa18.93■□□□□ 0.62
USP42-202ENST00000404008 C3orf79P0CE67 100 aa18.93■□□□□ 0.62
USP42-202ENST00000404008 PLNP26678 52 aa18.93■□□□□ 0.62
USP42-202ENST00000404008 SNRPEP62304 92 aaKnown RBP18.93■□□□□ 0.62
USP42-202ENST00000404008 PMCHL2Q9BQD1 86 aa18.93■□□□□ 0.62
USP42-202ENST00000404008 S100A2P29034 98 aa18.92■□□□□ 0.62
USP42-202ENST00000404008 BIRC6Q9NR09 4857 aa18.91■□□□□ 0.62
USP42-202ENST00000404008 IGLV5-39A0A0G2JS06 123 aa18.91■□□□□ 0.62
USP42-202ENST00000404008 NDUFA1O15239 70 aa18.91■□□□□ 0.62
USP42-202ENST00000404008 DPM2O94777 84 aa18.91■□□□□ 0.62
USP42-202ENST00000404008 PET117Q6UWS5 81 aa18.91■□□□□ 0.62
USP42-202ENST00000404008 HIST1H2BLQ99880 126 aa18.91■□□□□ 0.62
USP42-202ENST00000404008 C5orf52A6NGY3 159 aa18.9■□□□□ 0.62
USP42-202ENST00000404008 KRTDAPP60985 99 aa18.9■□□□□ 0.62
USP42-202ENST00000404008 C6orf226Q5I0X4 101 aa18.9■□□□□ 0.62
USP42-202ENST00000404008 COX7B2Q8TF08 81 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms