RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 C15orf56Q8N910 161 aa18.22■□□□□ 0.51
HMGB1-205ENST00000399494 OPRPNQ99935 248 aaPredicted RBP18.22■□□□□ 0.51
HMGB1-205ENST00000399494 C2orf66Q6UXQ4 117 aa18.21■□□□□ 0.51
HMGB1-205ENST00000399494 PRSS3P2Q8NHM4 247 aa18.21■□□□□ 0.51
HMGB1-205ENST00000399494 ALKBH7Q9BT30 221 aaPredicted RBP18.21■□□□□ 0.51
HMGB1-205ENST00000399494 TRAPPC1Q9Y5R8 145 aa18.2■□□□□ 0.5
HMGB1-205ENST00000399494 HIGD2BQ4VC39 106 aa18.19■□□□□ 0.5
HMGB1-205ENST00000399494 PYGO1Q9Y3Y4 419 aa18.19■□□□□ 0.5
HMGB1-205ENST00000399494 TRAV16A0A0A6YYK6 109 aaPredicted RBP18.18■□□□□ 0.5
HMGB1-205ENST00000399494 IFITM10A6NMD0 228 aa18.18■□□□□ 0.5
HMGB1-205ENST00000399494 MT1HL1P0DM35 61 aa18.17■□□□□ 0.5
HMGB1-205ENST00000399494 G0S2P27469 103 aa18.17■□□□□ 0.5
HMGB1-205ENST00000399494 CNBPP62633 177 aaKnown RBP18.17■□□□□ 0.5
HMGB1-205ENST00000399494 FAM104AQ969W3 186 aa18.17■□□□□ 0.5
HMGB1-205ENST00000399494 IGHV1-58A0A0C4DH39 117 aa18.16■□□□□ 0.5
HMGB1-205ENST00000399494 MALP21145 153 aa18.16■□□□□ 0.5
HMGB1-205ENST00000399494 TMEM141Q96I45 108 aa18.16■□□□□ 0.5
HMGB1-205ENST00000399494 IGLV4-3A0A075B6K6 122 aa18.15■□□□□ 0.5
HMGB1-205ENST00000399494 COX7A2LO14548 114 aa18.15■□□□□ 0.5
HMGB1-205ENST00000399494 CIRBPQ14011 172 aaKnown RBP18.15■□□□□ 0.5
HMGB1-205ENST00000399494 GVQW2A0A096LPI5 108 aaPredicted RBP18.14■□□□□ 0.49
HMGB1-205ENST00000399494 Q6ZN92 141 aa18.14■□□□□ 0.49
HMGB1-205ENST00000399494 Q6ZRU5 148 aa18.13■□□□□ 0.49
HMGB1-205ENST00000399494 SMCO4Q9NRQ5 59 aa18.13■□□□□ 0.49
HMGB1-205ENST00000399494 TEX43Q6ZNM6 134 aa18.12■□□□□ 0.49
HMGB1-205ENST00000399494 FA2HQ7L5A8 372 aa18.12■□□□□ 0.49
HMGB1-205ENST00000399494 C2orf88Q9BSF0 95 aa18.11■□□□□ 0.49
HMGB1-205ENST00000399494 C5orf38Q86SI9 138 aa18.1■□□□□ 0.49
HMGB1-205ENST00000399494 IGHV3-64A0A075B6Q5 118 aa18.09■□□□□ 0.49
HMGB1-205ENST00000399494 ZNF561-AS1K7EIQ3 104 aa18.09■□□□□ 0.49
HMGB1-205ENST00000399494 SLPIP03973 132 aa18.09■□□□□ 0.49
HMGB1-205ENST00000399494 CBLN2Q8IUK8 224 aa18.09■□□□□ 0.49
HMGB1-205ENST00000399494 NPSP0C0P6 89 aa18.08■□□□□ 0.48
HMGB1-205ENST00000399494 TOMM6Q96B49 74 aa18.08■□□□□ 0.48
HMGB1-205ENST00000399494 YPEL4Q96NS1 127 aa18.08■□□□□ 0.48
HMGB1-205ENST00000399494 VCX2Q9H322 139 aa18.08■□□□□ 0.48
HMGB1-205ENST00000399494 APOMO95445 188 aa18.07■□□□□ 0.48
HMGB1-205ENST00000399494 LINC01546A6NGU7 62 aa18.06■□□□□ 0.48
HMGB1-205ENST00000399494 IGIPA6NJ69 53 aa18.06■□□□□ 0.48
HMGB1-205ENST00000399494 PAPPA-AS1Q5QFB9 102 aa18.06■□□□□ 0.48
HMGB1-205ENST00000399494 DPH3Q96FX2 82 aa18.06■□□□□ 0.48
HMGB1-205ENST00000399494 LINC00526Q96FQ7 95 aa18.05■□□□□ 0.48
HMGB1-205ENST00000399494 SCGB3A1Q96QR1 104 aa18.05■□□□□ 0.48
HMGB1-205ENST00000399494 TIMM17AQ99595 171 aa18.05■□□□□ 0.48
HMGB1-205ENST00000399494 A0A087WYN8 130 aa18.04■□□□□ 0.48
HMGB1-205ENST00000399494 LINC01549A6NIU2 74 aa18.04■□□□□ 0.48
HMGB1-205ENST00000399494 C18orf32Q8TCD1 76 aa18.04■□□□□ 0.48
HMGB1-205ENST00000399494 ZC2HC1BQ5TFG8 222 aa18.03■□□□□ 0.48
HMGB1-205ENST00000399494 AMELXQ99217 191 aa18.03■□□□□ 0.48
HMGB1-205ENST00000399494 IGHV3OR16-9A0A0B4J2B5 98 aa18.02■□□□□ 0.48
HMGB1-205ENST00000399494 CHTF8P0CG12 524 aa18.02■□□□□ 0.48
HMGB1-205ENST00000399494 LINC00173Q6ZV60 143 aa18.02■□□□□ 0.48
HMGB1-205ENST00000399494 ERASQ7Z444 233 aa18.02■□□□□ 0.48
HMGB1-205ENST00000399494 UBE2D1P51668 147 aa18.01■□□□□ 0.47
HMGB1-205ENST00000399494 LINC00242Q5T6M2 205 aa18.01■□□□□ 0.47
HMGB1-205ENST00000399494 SPACA4Q8TDM5 124 aa18.01■□□□□ 0.47
HMGB1-205ENST00000399494 CARD19Q96LW7 228 aa18.01■□□□□ 0.47
HMGB1-205ENST00000399494 IGLV4-69A0A075B6H9 119 aa18■□□□□ 0.47
HMGB1-205ENST00000399494 LINC00614P0C842 121 aa17.98■□□□□ 0.47
HMGB1-205ENST00000399494 SPAG11BQ08648 103 aa17.98■□□□□ 0.47
HMGB1-205ENST00000399494 SYCNQ0VAF6 134 aa17.98■□□□□ 0.47
HMGB1-205ENST00000399494 OR10D4PQ8NGN7 298 aa17.98■□□□□ 0.47
HMGB1-205ENST00000399494 ORAOV1Q8WV07 137 aa17.98■□□□□ 0.47
HMGB1-205ENST00000399494 PLAC8Q9NZF1 115 aa17.98■□□□□ 0.47
HMGB1-205ENST00000399494 RAB5BP61020 215 aa17.97■□□□□ 0.47
HMGB1-205ENST00000399494 COX6A2Q02221 97 aa17.96■□□□□ 0.47
HMGB1-205ENST00000399494 CAMK2N2Q96S95 79 aa17.96■□□□□ 0.47
HMGB1-205ENST00000399494 PKIGQ9Y2B9 76 aa17.96■□□□□ 0.47
HMGB1-205ENST00000399494 A0A087WZ39 114 aa17.94■□□□□ 0.46
HMGB1-205ENST00000399494 SEC11AP67812 179 aa17.94■□□□□ 0.46
HMGB1-205ENST00000399494 C2orf48Q96LS8 159 aa17.94■□□□□ 0.46
HMGB1-205ENST00000399494 URB1-AS1Q96HZ7 61 aa17.93■□□□□ 0.46
HMGB1-205ENST00000399494 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.91■□□□□ 0.46
HMGB1-205ENST00000399494 HBDP02042 147 aa17.91■□□□□ 0.46
HMGB1-205ENST00000399494 FAM19A3Q7Z5A8 133 aa17.91■□□□□ 0.46
HMGB1-205ENST00000399494 GEMIN7Q9H840 131 aaKnown RBP17.91■□□□□ 0.46
HMGB1-205ENST00000399494 TNXBP22105 4242 aa17.9■□□□□ 0.46
HMGB1-205ENST00000399494 HERVK_113P63121 156 aa17.9■□□□□ 0.46
HMGB1-205ENST00000399494 C7orf33Q8WU49 177 aa17.9■□□□□ 0.46
HMGB1-205ENST00000399494 IGKV2-24A0A0C4DH68 120 aa17.89■□□□□ 0.45
HMGB1-205ENST00000399494 PMCHL1Q16048 86 aa17.89■□□□□ 0.45
HMGB1-205ENST00000399494 TRGC2P03986 189 aa17.88■□□□□ 0.45
HMGB1-205ENST00000399494 A0A096LNJ9 63 aa17.87■□□□□ 0.45
HMGB1-205ENST00000399494 A0A0J9YXV3 536 aa17.87■□□□□ 0.45
HMGB1-205ENST00000399494 PMVKQ15126 192 aa17.87■□□□□ 0.45
HMGB1-205ENST00000399494 LINC01561Q8N1V8 128 aa17.87■□□□□ 0.45
HMGB1-205ENST00000399494 F8WDY8 70 aa17.86■□□□□ 0.45
HMGB1-205ENST00000399494 NDUFA1O15239 70 aa17.86■□□□□ 0.45
HMGB1-205ENST00000399494 MAJINQ3KP22 176 aa17.86■□□□□ 0.45
HMGB1-205ENST00000399494 CST9LQ9H4G1 147 aa17.86■□□□□ 0.45
HMGB1-205ENST00000399494 A0A096LNI7 61 aa17.85■□□□□ 0.45
HMGB1-205ENST00000399494 PACRGQ96M98 296 aaPredicted RBP17.85■□□□□ 0.45
HMGB1-205ENST00000399494 LINC01600Q96MT4 127 aa17.85■□□□□ 0.45
HMGB1-205ENST00000399494 LOC107984640A0A0U1RRK4 108 aa17.84■□□□□ 0.45
HMGB1-205ENST00000399494 NDUFA6P56556 154 aa17.84■□□□□ 0.45
HMGB1-205ENST00000399494 CHCHD1Q96BP2 118 aaKnown RBP17.84■□□□□ 0.45
HMGB1-205ENST00000399494 LRP2P98164 4655 aa17.83■□□□□ 0.45
HMGB1-205ENST00000399494 BAGE3Q86Y29 109 aa17.83■□□□□ 0.44
HMGB1-205ENST00000399494 LINC00469Q8N7U9 141 aa17.83■□□□□ 0.44
HMGB1-205ENST00000399494 LINC00474Q9P2X8 69 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms