RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 RPL39P62891 51 aaKnown RBP12.68□□□□□ -0.38
TRAF4-203ENST00000394925 TMEM241Q24JQ0 296 aa12.68□□□□□ -0.38
TRAF4-203ENST00000394925 C6orf48Q9UBA6 75 aa12.68□□□□□ -0.38
TRAF4-203ENST00000394925 UBE2BP63146 152 aa12.67□□□□□ -0.38
TRAF4-203ENST00000394925 BLOC1S1P78537 153 aa12.67□□□□□ -0.38
TRAF4-203ENST00000394925 MRPL51Q4U2R6 128 aaKnown RBP12.66□□□□□ -0.38
TRAF4-203ENST00000394925 KRTAP7-1Q8IUC3 87 aa12.66□□□□□ -0.38
TRAF4-203ENST00000394925 TCTE3Q8IZS6 198 aa12.66□□□□□ -0.38
TRAF4-203ENST00000394925 FAM104AQ969W3 186 aa12.66□□□□□ -0.38
TRAF4-203ENST00000394925 M0QXV9 152 aa12.65□□□□□ -0.38
TRAF4-203ENST00000394925 SMDT1Q9H4I9 107 aa12.65□□□□□ -0.38
TRAF4-203ENST00000394925 V9GYV3 84 aa12.65□□□□□ -0.38
TRAF4-203ENST00000394925 ZNF727A8MUV8 499 aa12.64□□□□□ -0.39
TRAF4-203ENST00000394925 RPL13AP40429 203 aaKnown RBP12.64□□□□□ -0.39
TRAF4-203ENST00000394925 FAM104BQ5XKR9 115 aa12.64□□□□□ -0.39
TRAF4-203ENST00000394925 ALKAL2Q6UX46 152 aa12.64□□□□□ -0.39
TRAF4-203ENST00000394925 EIF5A2Q9GZV4 153 aaKnown RBP12.64□□□□□ -0.39
TRAF4-203ENST00000394925 C20orf78Q9BR46 151 aa12.63□□□□□ -0.39
TRAF4-203ENST00000394925 IFITM10A6NMD0 228 aa12.62□□□□□ -0.39
TRAF4-203ENST00000394925 SPANXA1Q9NS26 97 aa12.62□□□□□ -0.39
TRAF4-203ENST00000394925 TRBV24-1A0A075B6N3 115 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 A0A0U1RQV1 116 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 TCAPO15273 167 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 CKS2P33552 79 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 HBBP68871 147 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 MRPS36P82909 103 aaKnown RBP12.61□□□□□ -0.39
TRAF4-203ENST00000394925 KRTAP9-2Q9BYQ4 174 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 NAT8BQ9UHF3 227 aa12.61□□□□□ -0.39
TRAF4-203ENST00000394925 LINC00862A6NCI5 91 aa12.6□□□□□ -0.39
TRAF4-203ENST00000394925 RPL32P62910 135 aaKnown RBP12.6□□□□□ -0.39
TRAF4-203ENST00000394925 TGIF2-C20orf24A0A0A6YYL0 155 aa12.59□□□□□ -0.39
TRAF4-203ENST00000394925 TNFRSF6BO95407 300 aa12.59□□□□□ -0.39
TRAF4-203ENST00000394925 KIAA0087Q14695 138 aa12.59□□□□□ -0.39
TRAF4-203ENST00000394925 SMIM2Q9BVW6 85 aa12.58□□□□□ -0.4
TRAF4-203ENST00000394925 CARHSP1Q9Y2V2 147 aaKnown RBP12.58□□□□□ -0.4
TRAF4-203ENST00000394925 SRP19P09132 144 aaKnown RBP12.57□□□□□ -0.4
TRAF4-203ENST00000394925 C9orf129Q5T035 196 aaKnown RBP12.57□□□□□ -0.4
TRAF4-203ENST00000394925 C2orf82Q6UX34 121 aa12.57□□□□□ -0.4
TRAF4-203ENST00000394925 TRBV30A0A0K0K1B3 111 aa12.56□□□□□ -0.4
TRAF4-203ENST00000394925 NDUFC2-KCTD14E9PQ53 114 aa12.56□□□□□ -0.4
TRAF4-203ENST00000394925 TSPAN13O95857 204 aa12.56□□□□□ -0.4
TRAF4-203ENST00000394925 FAM74A3Q4VXF1 159 aa12.56□□□□□ -0.4
TRAF4-203ENST00000394925 D6R8Y8 96 aa12.54□□□□□ -0.4
TRAF4-203ENST00000394925 ZNF861PO60384 105 aa12.54□□□□□ -0.4
TRAF4-203ENST00000394925 PACRGQ96M98 296 aaPredicted RBP12.54□□□□□ -0.4
TRAF4-203ENST00000394925 SMIM27A0A1W2PRY6 76 aa12.53□□□□□ -0.4
TRAF4-203ENST00000394925 NPYP01303 97 aa12.53□□□□□ -0.4
TRAF4-203ENST00000394925 RPL23P62829 140 aaKnown RBP12.53□□□□□ -0.4
TRAF4-203ENST00000394925 LINC00242Q5T6M2 205 aa12.53□□□□□ -0.4
TRAF4-203ENST00000394925 A0A1B0GW15 77 aa12.52□□□□□ -0.41
TRAF4-203ENST00000394925 IFI27P40305 119 aaPredicted RBP12.52□□□□□ -0.41
TRAF4-203ENST00000394925 ADIRFQ15847 76 aa12.51□□□□□ -0.41
TRAF4-203ENST00000394925 IGLV4-3A0A075B6K6 122 aa12.49□□□□□ -0.41
TRAF4-203ENST00000394925 MRPL54Q6P161 138 aaKnown RBP12.49□□□□□ -0.41
TRAF4-203ENST00000394925 F8W036 122 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 NUPR1O60356 82 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 RAB5AP20339 215 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 LINC00469Q8N7U9 141 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 TMEM141Q96I45 108 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 PYGO1Q9Y3Y4 419 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 C22orf24Q9Y442 160 aa12.48□□□□□ -0.41
TRAF4-203ENST00000394925 FAT4Q6V0I7 4981 aa12.47□□□□□ -0.41
TRAF4-203ENST00000394925 CTDSP1Q9GZU7 261 aa12.47□□□□□ -0.41
TRAF4-203ENST00000394925 S100A8P05109 93 aa12.46□□□□□ -0.41
TRAF4-203ENST00000394925 A0A087X002 238 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 PPBPP02775 128 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 PRSS2P07478 247 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 TEX43Q6ZNM6 134 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 LINC01561Q8N1V8 128 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 XAGE1AQ9HD64 81 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 TOMM7Q9P0U1 55 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 NAT8Q9UHE5 227 aa12.45□□□□□ -0.42
TRAF4-203ENST00000394925 A0A1B0GXF2 115 aa12.44□□□□□ -0.42
TRAF4-203ENST00000394925 CKS1BP61024 79 aa12.44□□□□□ -0.42
TRAF4-203ENST00000394925 LBHQ53QV2 105 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-203ENST00000394925 LCE2AQ5TA79 106 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-203ENST00000394925 ZC2HC1BQ5TFG8 222 aa12.44□□□□□ -0.42
TRAF4-203ENST00000394925 AKAP14Q86UN6 197 aa12.43□□□□□ -0.42
TRAF4-203ENST00000394925 ORMDL3Q8N138 153 aa12.43□□□□□ -0.42
TRAF4-203ENST00000394925 TYMSOSQ8TAI1 123 aa12.43□□□□□ -0.42
TRAF4-203ENST00000394925 C6orf226Q5I0X4 101 aa12.42□□□□□ -0.42
TRAF4-203ENST00000394925 Q6ZN92 141 aa12.42□□□□□ -0.42
TRAF4-203ENST00000394925 TMEM136Q6ZRR5 245 aa12.42□□□□□ -0.42
TRAF4-203ENST00000394925 PRELID3AQ96N28 172 aa12.42□□□□□ -0.42
TRAF4-203ENST00000394925 C2orf88Q9BSF0 95 aa12.42□□□□□ -0.42
TRAF4-203ENST00000394925 C9JQL5 133 aa12.41□□□□□ -0.42
TRAF4-203ENST00000394925 CRYGAP11844 174 aa12.41□□□□□ -0.42
TRAF4-203ENST00000394925 RPL28P46779 137 aaKnown RBP12.41□□□□□ -0.42
TRAF4-203ENST00000394925 LOC389332A0A1B0GUA5 103 aa12.39□□□□□ -0.43
TRAF4-203ENST00000394925 MRPL55Q7Z7F7 128 aaKnown RBP12.39□□□□□ -0.43
TRAF4-203ENST00000394925 ALKBH7Q9BT30 221 aaPredicted RBP12.39□□□□□ -0.43
TRAF4-203ENST00000394925 BCE1O60756 84 aa12.38□□□□□ -0.43
TRAF4-203ENST00000394925 LINC00173Q6ZV60 143 aa12.38□□□□□ -0.43
TRAF4-203ENST00000394925 Q8IZM0 81 aa12.38□□□□□ -0.43
TRAF4-203ENST00000394925 VCX2Q9H322 139 aa12.38□□□□□ -0.43
TRAF4-203ENST00000394925 AMELXQ99217 191 aa12.37□□□□□ -0.43
TRAF4-203ENST00000394925 ANAPC11Q9NYG5 84 aa12.37□□□□□ -0.43
TRAF4-203ENST00000394925 TP73-AS1Q9UF72 201 aa12.37□□□□□ -0.43
TRAF4-203ENST00000394925 CYSLTR1Q9Y271 337 aa12.37□□□□□ -0.43
TRAF4-203ENST00000394925 SRSF3P84103 164 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms