RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 CYSRT1A8MQ03 144 aa13.11□□□□□ -0.31
PCDHA1-202ENST00000394633 FAM19A3Q7Z5A8 133 aa13.11□□□□□ -0.31
PCDHA1-202ENST00000394633 SMIM1B2RUZ4 78 aa13.1□□□□□ -0.31
PCDHA1-202ENST00000394633 NHLRC4P0CG21 123 aaPredicted RBP13.1□□□□□ -0.31
PCDHA1-202ENST00000394633 NTM-AS1Q6ZSK4 140 aa13.1□□□□□ -0.31
PCDHA1-202ENST00000394633 C15orf53Q8NAA6 179 aa13.1□□□□□ -0.31
PCDHA1-202ENST00000394633 A0A0U1RRA0 63 aa13.09□□□□□ -0.31
PCDHA1-202ENST00000394633 HILS1P60008 231 aa13.09□□□□□ -0.31
PCDHA1-202ENST00000394633 RNASE1P07998 156 aaKnown RBP13.09□□□□□ -0.31
PCDHA1-202ENST00000394633 SOSTDC1Q6X4U4 206 aa13.09□□□□□ -0.31
PCDHA1-202ENST00000394633 STHQ8IWL8 128 aa13.09□□□□□ -0.31
PCDHA1-202ENST00000394633 DEFB121Q5J5C9 76 aa13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 TRAV13-1A0A0B4J241 112 aa13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 K7EQD1 137 aa13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 RPL36AP83881 106 aaKnown RBP13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 Q6ZTI0 123 aa13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 RPL36ALQ969Q0 106 aaKnown RBP13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 CSDC2Q9Y534 153 aaKnown RBP13.08□□□□□ -0.32
PCDHA1-202ENST00000394633 Q6Q795 121 aa13.07□□□□□ -0.32
PCDHA1-202ENST00000394633 NDUFV3P56181 108 aaKnown RBP13.07□□□□□ -0.32
PCDHA1-202ENST00000394633 TRBV10-1A0A0K0K1A3 114 aa13.06□□□□□ -0.32
PCDHA1-202ENST00000394633 WNK1Q9H4A3 2382 aa13.06□□□□□ -0.32
PCDHA1-202ENST00000394633 F5H768 121 aa13.05□□□□□ -0.32
PCDHA1-202ENST00000394633 C11orf44Q8N8P7 122 aa13.05□□□□□ -0.32
PCDHA1-202ENST00000394633 DAZ2Q13117 558 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-202ENST00000394633 DAZ4Q86SG3 579 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-202ENST00000394633 DAZ3Q9NR90 486 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-202ENST00000394633 CDC42SE2Q9NRR3 84 aa13.05□□□□□ -0.32
PCDHA1-202ENST00000394633 TRAV25A0A0B4J276 109 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 PRIMA1Q86XR5 153 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 TENM1Q9UKZ4 2725 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 GAGE12JA6NER3 117 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 COX7A2LO14548 114 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 GAGE4Q13068 117 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 GAGE5Q13069 117 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 TTC32Q5I0X7 151 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 LINC01006Q8NI28 216 aa13.04□□□□□ -0.32
PCDHA1-202ENST00000394633 FAM240AA0A1B0GVK7 77 aa13.03□□□□□ -0.32
PCDHA1-202ENST00000394633 MEIG1Q5JSS6 88 aa13.03□□□□□ -0.32
PCDHA1-202ENST00000394633 SHISA2Q6UWI4 295 aa13.03□□□□□ -0.32
PCDHA1-202ENST00000394633 MAST4O15021 2626 aa13.03□□□□□ -0.32
PCDHA1-202ENST00000394633 MRPL23Q16540 153 aaKnown RBP13.02□□□□□ -0.33
PCDHA1-202ENST00000394633 A0A1W2PRX2 142 aa13.01□□□□□ -0.33
PCDHA1-202ENST00000394633 COPS9Q8WXC6 57 aa13.01□□□□□ -0.33
PCDHA1-202ENST00000394633 GAGE6Q13070 117 aa13.01□□□□□ -0.33
PCDHA1-202ENST00000394633 NOP10Q9NPE3 64 aaKnown RBP13□□□□□ -0.33
PCDHA1-202ENST00000394633 HERV-K104P63124 156 aa12.99□□□□□ -0.33
PCDHA1-202ENST00000394633 CCL24O00175 119 aa12.98□□□□□ -0.33
PCDHA1-202ENST00000394633 TMEM243Q9BU79 118 aa12.98□□□□□ -0.33
PCDHA1-202ENST00000394633 C16orf95Q9H693 158 aa12.98□□□□□ -0.33
PCDHA1-202ENST00000394633 ATRQ13535 2644 aa12.97□□□□□ -0.33
PCDHA1-202ENST00000394633 UBE2L6O14933 153 aa12.97□□□□□ -0.33
PCDHA1-202ENST00000394633 GIG44P09565 113 aaPredicted RBP12.97□□□□□ -0.33
PCDHA1-202ENST00000394633 VWFP04275 2813 aa12.96□□□□□ -0.33
PCDHA1-202ENST00000394633 LOC100131303A0A0U1RQF7 123 aa12.96□□□□□ -0.33
PCDHA1-202ENST00000394633 B5MCH6 92 aa12.96□□□□□ -0.33
PCDHA1-202ENST00000394633 PLAC8L1A1L4L8 177 aa12.96□□□□□ -0.34
PCDHA1-202ENST00000394633 CCDC179H3BU77 68 aa12.95□□□□□ -0.34
PCDHA1-202ENST00000394633 PPDPFQ9H3Y8 114 aa12.95□□□□□ -0.34
PCDHA1-202ENST00000394633 SS18L2Q9UHA2 77 aa12.95□□□□□ -0.34
PCDHA1-202ENST00000394633 TRACP01848 142 aa12.94□□□□□ -0.34
PCDHA1-202ENST00000394633 FAM218AQ96MZ4 157 aa12.94□□□□□ -0.34
PCDHA1-202ENST00000394633 GAGE7O76087 117 aa12.94□□□□□ -0.34
PCDHA1-202ENST00000394633 GAGE12FP0CL80 117 aa12.94□□□□□ -0.34
PCDHA1-202ENST00000394633 GAGE12GP0CL81 117 aa12.94□□□□□ -0.34
PCDHA1-202ENST00000394633 GAGE12IP0CL82 117 aa12.94□□□□□ -0.34
PCDHA1-202ENST00000394633 TRBV7-7A0A0K0K1E9 115 aa12.92□□□□□ -0.34
PCDHA1-202ENST00000394633 C16orf74Q96GX8 76 aa12.92□□□□□ -0.34
PCDHA1-202ENST00000394633 WFDC10AQ9H1F0 79 aa12.92□□□□□ -0.34
PCDHA1-202ENST00000394633 C22orf24Q9Y442 160 aa12.92□□□□□ -0.34
PCDHA1-202ENST00000394633 TRGV2A0A075B6R0 118 aa12.92□□□□□ -0.34
PCDHA1-202ENST00000394633 COX7B2Q8TF08 81 aa12.92□□□□□ -0.34
PCDHA1-202ENST00000394633 NOTCH3Q9UM47 2321 aa12.91□□□□□ -0.34
PCDHA1-202ENST00000394633 BAALC-AS2P0C853 105 aa12.91□□□□□ -0.34
PCDHA1-202ENST00000394633 TRRAPQ9Y4A5 3859 aa12.91□□□□□ -0.34
PCDHA1-202ENST00000394633 ACYP1P07311 99 aa12.9□□□□□ -0.34
PCDHA1-202ENST00000394633 KRTAP10-3P60369 221 aa12.9□□□□□ -0.34
PCDHA1-202ENST00000394633 MIR7-3HGQ8N6C7 128 aa12.9□□□□□ -0.34
PCDHA1-202ENST00000394633 TRBV6-4A0A1B0GX49 114 aa12.89□□□□□ -0.35
PCDHA1-202ENST00000394633 RPL35AP18077 110 aaKnown RBP12.89□□□□□ -0.35
PCDHA1-202ENST00000394633 IGKV3OR2-268A0A0C4DH90 116 aa12.89□□□□□ -0.35
PCDHA1-202ENST00000394633 LINC00337Q8N6G1 96 aa12.89□□□□□ -0.35
PCDHA1-202ENST00000394633 SMCR5Q8TEV8 140 aa12.89□□□□□ -0.35
PCDHA1-202ENST00000394633 TOMM7Q9P0U1 55 aa12.89□□□□□ -0.35
PCDHA1-202ENST00000394633 IGLV4-60A0A075B6I1 120 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 IGKV2-28A0A075B6P5 120 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 TRAV13-2A0A0B4J235 113 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 IGKV2D-28P01615 120 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 RPL28P46779 137 aaKnown RBP12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 FAM222AQ5U5X8 452 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 FBN1P35555 2871 aaKnown RBP12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 PF4P02776 101 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 OVOL2Q9BRP0 275 aa12.88□□□□□ -0.35
PCDHA1-202ENST00000394633 TRGV4A0A0C4DH28 118 aa12.87□□□□□ -0.35
PCDHA1-202ENST00000394633 CRPP02741 224 aa12.87□□□□□ -0.35
PCDHA1-202ENST00000394633 SND1-IT1Q9HBX3 110 aa12.87□□□□□ -0.35
PCDHA1-202ENST00000394633 C19orf73Q9NVV2 129 aa12.86□□□□□ -0.35
PCDHA1-202ENST00000394633 CMC4P56277 68 aaPredicted RBP12.86□□□□□ -0.35
PCDHA1-202ENST00000394633 CSNK1G2-AS1Q8NCQ2 148 aa12.86□□□□□ -0.35
PCDHA1-202ENST00000394633 Q9HAA7 133 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms