RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ADORA2A-AS1P86434 159 aa8.7□□□□□ -1.02
SYNPO-202ENST00000394243 BEAN1Q3B7T3 259 aa8.7□□□□□ -1.02
SYNPO-202ENST00000394243 IGLV4-69A0A075B6H9 119 aa8.7□□□□□ -1.02
SYNPO-202ENST00000394243 LOC100131303A0A0U1RQF7 123 aa8.7□□□□□ -1.02
SYNPO-202ENST00000394243 GOLGB1Q14789 3259 aaKnown RBP8.7□□□□□ -1.02
SYNPO-202ENST00000394243 COX17Q14061 63 aa8.69□□□□□ -1.02
SYNPO-202ENST00000394243 PRM2P04554 102 aa8.69□□□□□ -1.02
SYNPO-202ENST00000394243 RPL28P46779 137 aaKnown RBP8.69□□□□□ -1.02
SYNPO-202ENST00000394243 C11orf45Q8TAV5 145 aa8.69□□□□□ -1.02
SYNPO-202ENST00000394243 CNFNQ9BYD5 112 aa8.69□□□□□ -1.02
SYNPO-202ENST00000394243 ZNF843Q8N446 348 aa8.69□□□□□ -1.02
SYNPO-202ENST00000394243 C2CD3Q4AC94 2353 aa8.69□□□□□ -1.02
SYNPO-202ENST00000394243 PIP4P1Q86T03 277 aa8.68□□□□□ -1.02
SYNPO-202ENST00000394243 SPG11Q96JI7 2443 aa8.68□□□□□ -1.02
SYNPO-202ENST00000394243 PLA2G2AP14555 144 aa8.68□□□□□ -1.02
SYNPO-202ENST00000394243 C4orf26Q17RF5 130 aa8.68□□□□□ -1.02
SYNPO-202ENST00000394243 ADAMTSL4-AS1Q5T5F5 129 aa8.68□□□□□ -1.02
SYNPO-202ENST00000394243 BBC3Q96PG8 261 aaPredicted RBP8.67□□□□□ -1.02
SYNPO-202ENST00000394243 OTOGLQ3ZCN5 2332 aa8.67□□□□□ -1.02
SYNPO-202ENST00000394243 HILS1P60008 231 aa8.67□□□□□ -1.02
SYNPO-202ENST00000394243 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.67□□□□□ -1.02
SYNPO-202ENST00000394243 CDC42SE2Q9NRR3 84 aa8.66□□□□□ -1.02
SYNPO-202ENST00000394243 KLLNB2CW77 178 aa8.66□□□□□ -1.02
SYNPO-202ENST00000394243 PRR3P79522 188 aaKnown RBP8.65□□□□□ -1.02
SYNPO-202ENST00000394243 DSCAMO60469 2012 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 TNFRSF13BO14836 293 aaPredicted RBP8.65□□□□□ -1.02
SYNPO-202ENST00000394243 TMEM254Q8TBM7 123 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 FAM208BQ5VWN6 2430 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 COX6A2Q02221 97 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 LINC00242Q5T6M2 205 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 LINC00846Q9NV44 126 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 Q8IZM0 81 aa8.65□□□□□ -1.02
SYNPO-202ENST00000394243 PTPN13Q12923 2485 aa8.65□□□□□ -1.03
SYNPO-202ENST00000394243 LINC01547P58512 204 aaPredicted RBP8.65□□□□□ -1.03
SYNPO-202ENST00000394243 MUC4Q99102 2169 aa8.65□□□□□ -1.03
SYNPO-202ENST00000394243 NAV3Q8IVL0 2385 aa8.64□□□□□ -1.03
SYNPO-202ENST00000394243 IGLV9-49A0A0B4J1Y8 123 aa8.64□□□□□ -1.03
SYNPO-202ENST00000394243 LMO4P61968 165 aa8.64□□□□□ -1.03
SYNPO-202ENST00000394243 ZNF580Q9UK33 172 aa8.64□□□□□ -1.03
SYNPO-202ENST00000394243 DEFB131BA0A096LNP1 70 aa8.64□□□□□ -1.03
SYNPO-202ENST00000394243 ESRGQ1W209 222 aa8.64□□□□□ -1.03
SYNPO-202ENST00000394243 PCOTHQ58A44 107 aa8.63□□□□□ -1.03
SYNPO-202ENST00000394243 EXPH5Q8NEV8 1989 aa8.63□□□□□ -1.03
SYNPO-202ENST00000394243 SMIM1B2RUZ4 78 aa8.63□□□□□ -1.03
SYNPO-202ENST00000394243 A0A096LNJ9 63 aa8.63□□□□□ -1.03
SYNPO-202ENST00000394243 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.63□□□□□ -1.03
SYNPO-202ENST00000394243 CRYGAP11844 174 aa8.62□□□□□ -1.03
SYNPO-202ENST00000394243 C1orf137Q5JT78 98 aa8.62□□□□□ -1.03
SYNPO-202ENST00000394243 C10orf99Q6UWK7 81 aa8.62□□□□□ -1.03
SYNPO-202ENST00000394243 LINC00575Q6W349 94 aa8.62□□□□□ -1.03
SYNPO-202ENST00000394243 C9orf116Q5BN46 136 aaPredicted RBP8.62□□□□□ -1.03
SYNPO-202ENST00000394243 CYSRT1A8MQ03 144 aa8.62□□□□□ -1.03
SYNPO-202ENST00000394243 DAZAP2Q15038 168 aaPredicted RBP8.61□□□□□ -1.03
SYNPO-202ENST00000394243 SERTAD4-AS1Q5TG53 156 aa8.61□□□□□ -1.03
SYNPO-202ENST00000394243 Q6ZVQ6 151 aa8.61□□□□□ -1.03
SYNPO-202ENST00000394243 TRBV10-3A0A0K0K1G6 114 aa8.6□□□□□ -1.03
SYNPO-202ENST00000394243 LINC00482Q8N8I6 264 aa8.6□□□□□ -1.03
SYNPO-202ENST00000394243 PRORYQ9H606 182 aa8.6□□□□□ -1.03
SYNPO-202ENST00000394243 SRCAPQ6ZRS2 3230 aa8.6□□□□□ -1.03
SYNPO-202ENST00000394243 H0Y9P7 68 aa8.6□□□□□ -1.03
SYNPO-202ENST00000394243 A0A1W2PNU3 283 aaPredicted RBP8.6□□□□□ -1.03
SYNPO-202ENST00000394243 UNQ6190/PRO20217Q6UXQ8 127 aa8.59□□□□□ -1.03
SYNPO-202ENST00000394243 Q8N6K4 173 aa8.59□□□□□ -1.03
SYNPO-202ENST00000394243 C10orf25Q5T742 122 aa8.59□□□□□ -1.03
SYNPO-202ENST00000394243 PLA2G1BP04054 148 aaKnown RBP8.58□□□□□ -1.04
SYNPO-202ENST00000394243 Q6YL49 198 aa8.58□□□□□ -1.04
SYNPO-202ENST00000394243 LELP1Q5T871 98 aa8.58□□□□□ -1.04
SYNPO-202ENST00000394243 MUC7Q8TAX7 377 aa8.58□□□□□ -1.04
SYNPO-202ENST00000394243 PSMG3-AS1Q96PY0 264 aa8.58□□□□□ -1.04
SYNPO-202ENST00000394243 CHCHD7Q9BUK0 85 aa8.57□□□□□ -1.04
SYNPO-202ENST00000394243 ZNF706Q9Y5V0 76 aaPredicted RBP8.57□□□□□ -1.04
SYNPO-202ENST00000394243 FBXL19-AS1Q494R0 122 aa8.57□□□□□ -1.04
SYNPO-202ENST00000394243 ANKHD1Q8IWZ3 2542 aaKnown RBP8.57□□□□□ -1.04
SYNPO-202ENST00000394243 CEP192Q8TEP8 1941 aa8.57□□□□□ -1.04
SYNPO-202ENST00000394243 SONP18583 2426 aaKnown RBP8.57□□□□□ -1.04
SYNPO-202ENST00000394243 RPS28P62857 69 aaKnown RBP8.56□□□□□ -1.04
SYNPO-202ENST00000394243 PLAC8L1A1L4L8 177 aa8.56□□□□□ -1.04
SYNPO-202ENST00000394243 Q9UF83 564 aa8.56□□□□□ -1.04
SYNPO-202ENST00000394243 IGLV2-18A0A075B6J9 118 aa8.56□□□□□ -1.04
SYNPO-202ENST00000394243 DEFB116Q30KQ4 102 aa8.56□□□□□ -1.04
SYNPO-202ENST00000394243 IGF2-ASQ6U949 168 aa8.55□□□□□ -1.04
SYNPO-202ENST00000394243 AMELXQ99217 191 aa8.55□□□□□ -1.04
SYNPO-202ENST00000394243 LIMD2Q9BT23 127 aa8.55□□□□□ -1.04
SYNPO-202ENST00000394243 SMCPP49901 116 aaPredicted RBP8.55□□□□□ -1.04
SYNPO-202ENST00000394243 IGHV6-1A0A0B4J1U7 121 aa8.54□□□□□ -1.04
SYNPO-202ENST00000394243 KPRPQ5T749 579 aaPredicted RBP8.54□□□□□ -1.04
SYNPO-202ENST00000394243 RETNLBQ9BQ08 111 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 hDV103S1A0JD37 113 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 Q8NA96 180 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 FSTL3O95633 263 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 C18orf65Q6ZTR6 163 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 X6R8D5 127 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 A8MTW9 85 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 CXCL6P80162 114 aa8.53□□□□□ -1.04
SYNPO-202ENST00000394243 COL5A1P20908 1838 aaPredicted RBP8.52□□□□□ -1.04
SYNPO-202ENST00000394243 IGLV4-60A0A075B6I1 120 aa8.52□□□□□ -1.04
SYNPO-202ENST00000394243 SPINK1P00995 79 aa8.52□□□□□ -1.05
SYNPO-202ENST00000394243 HCG22E2RYF7 251 aa8.52□□□□□ -1.05
SYNPO-202ENST00000394243 HIVEP2P31629 2446 aa8.52□□□□□ -1.05
SYNPO-202ENST00000394243 MRGPRG-AS1Q2M3A8 158 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms