RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CDKN2A-AS1Q9UH64 79 aa8.64□□□□□ -1.03
NPHP4-202ENST00000378161 VCANP13611 3396 aa8.63□□□□□ -1.03
NPHP4-202ENST00000378161 TSHBP01222 138 aa8.63□□□□□ -1.03
NPHP4-202ENST00000378161 MSMBP08118 114 aa8.63□□□□□ -1.03
NPHP4-202ENST00000378161 MYO9AB2RTY4 2548 aa8.62□□□□□ -1.03
NPHP4-202ENST00000378161 KLK9Q9UKQ9 250 aa8.62□□□□□ -1.03
NPHP4-202ENST00000378161 PCSK5Q92824 1860 aa8.62□□□□□ -1.03
NPHP4-202ENST00000378161 DEFB131AP59861 70 aa8.62□□□□□ -1.03
NPHP4-202ENST00000378161 DOPEY1Q5JWR5 2465 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 LAMA1P25391 3075 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 SMIM11BQ8TCY0 68 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 PSMG3-AS1Q96PY0 264 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 LINC00269Q8N2A0 174 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 INSP01308 110 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 Q6ZRU5 148 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 NKAPP1Q8N9T2 125 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 ABCA2Q9BZC7 2435 aa8.61□□□□□ -1.03
NPHP4-202ENST00000378161 ZNF73O43830 326 aaPredicted RBP8.6□□□□□ -1.03
NPHP4-202ENST00000378161 PRR4Q16378 134 aa8.6□□□□□ -1.03
NPHP4-202ENST00000378161 A0A087WYN8 130 aa8.6□□□□□ -1.03
NPHP4-202ENST00000378161 TRGV1A0A0A0MS02 117 aa8.6□□□□□ -1.03
NPHP4-202ENST00000378161 AMELXQ99217 191 aa8.6□□□□□ -1.03
NPHP4-202ENST00000378161 SPEGQ15772 3267 aa8.6□□□□□ -1.03
NPHP4-202ENST00000378161 DSCAMO60469 2012 aa8.6□□□□□ -1.03
NPHP4-202ENST00000378161 TRGV4A0A0C4DH28 118 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 TRBV6-5A0A0K0K1A5 114 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 FBXL19-AS1Q494R0 122 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 PRR15LQ9BU68 103 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 IGHV3-38A0A0C4DH36 116 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 TLN2Q9Y4G6 2542 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 EYSQ5T1H1 3165 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 VPS13AQ96RL7 3174 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 MP68P56378 58 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 ZFYVE26Q68DK2 2539 aa8.59□□□□□ -1.03
NPHP4-202ENST00000378161 ODF3BA8MYP8 253 aa8.58□□□□□ -1.04
NPHP4-202ENST00000378161 C1orf158Q8N1D5 194 aa8.58□□□□□ -1.04
NPHP4-202ENST00000378161 C5orf56Q8N8D9 126 aa8.58□□□□□ -1.04
NPHP4-202ENST00000378161 EIF4EBP3O60516 100 aaPredicted RBP8.58□□□□□ -1.04
NPHP4-202ENST00000378161 Q6ZVQ6 151 aa8.58□□□□□ -1.04
NPHP4-202ENST00000378161 CMC4P56277 68 aaPredicted RBP8.58□□□□□ -1.04
NPHP4-202ENST00000378161 H3BQ85 93 aa8.57□□□□□ -1.04
NPHP4-202ENST00000378161 ZFAND3Q9H8U3 227 aa8.57□□□□□ -1.04
NPHP4-202ENST00000378161 LINC01547P58512 204 aaPredicted RBP8.57□□□□□ -1.04
NPHP4-202ENST00000378161 GPHB5Q86YW7 130 aa8.57□□□□□ -1.04
NPHP4-202ENST00000378161 Q8NA96 180 aa8.57□□□□□ -1.04
NPHP4-202ENST00000378161 LINC01356Q8N9X3 169 aa8.57□□□□□ -1.04
NPHP4-202ENST00000378161 FAM218AQ96MZ4 157 aa8.57□□□□□ -1.04
NPHP4-202ENST00000378161 USP9YO00507 2555 aaPredicted RBP8.56□□□□□ -1.04
NPHP4-202ENST00000378161 ZFP36P26651 326 aaKnown RBP8.56□□□□□ -1.04
NPHP4-202ENST00000378161 NANOS2P60321 138 aaKnown RBP8.56□□□□□ -1.04
NPHP4-202ENST00000378161 Q8N2B8 174 aa8.56□□□□□ -1.04
NPHP4-202ENST00000378161 TRAV10A0A0B4J240 114 aa8.56□□□□□ -1.04
NPHP4-202ENST00000378161 LYPD5Q6UWN5 251 aa8.56□□□□□ -1.04
NPHP4-202ENST00000378161 WDFY4Q6ZS81 3184 aa8.56□□□□□ -1.04
NPHP4-202ENST00000378161 WNK1Q9H4A3 2382 aa8.56□□□□□ -1.04
NPHP4-202ENST00000378161 CD164L2Q6UWJ8 174 aa8.56□□□□□ -1.04
NPHP4-202ENST00000378161 HIVEP3Q5T1R4 2406 aa8.55□□□□□ -1.04
NPHP4-202ENST00000378161 IGHV3-53P01767 116 aa8.55□□□□□ -1.04
NPHP4-202ENST00000378161 CCDC140Q96MF4 163 aa8.55□□□□□ -1.04
NPHP4-202ENST00000378161 ZNF462Q96JM2 2506 aa8.55□□□□□ -1.04
NPHP4-202ENST00000378161 C2CD3Q4AC94 2353 aa8.55□□□□□ -1.04
NPHP4-202ENST00000378161 UBE2E2Q96LR5 201 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 COL4A2P08572 1712 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 NDUFB1O75438 58 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 CXCL6P80162 114 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 LCA10Q71F78 164 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 MDFIQ99750 246 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 TM2D3Q9BRN9 247 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 SMAD5-AS1Q9Y6J3 95 aa8.54□□□□□ -1.04
NPHP4-202ENST00000378161 K7EMT4 169 aa8.53□□□□□ -1.04
NPHP4-202ENST00000378161 C11orf45Q8TAV5 145 aa8.53□□□□□ -1.04
NPHP4-202ENST00000378161 USP9XQ93008 2570 aaPredicted RBP8.53□□□□□ -1.04
NPHP4-202ENST00000378161 C16orf95Q9H693 158 aa8.53□□□□□ -1.04
NPHP4-202ENST00000378161 CELSR3Q9NYQ7 3312 aa8.53□□□□□ -1.04
NPHP4-202ENST00000378161 IGHV3-16A0A0C4DH30 117 aa8.53□□□□□ -1.04
NPHP4-202ENST00000378161 M0QY20 66 aa8.53□□□□□ -1.04
NPHP4-202ENST00000378161 LIMD2Q9BT23 127 aa8.52□□□□□ -1.04
NPHP4-202ENST00000378161 HCG22E2RYF7 251 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 ADORA2A-AS1P86434 159 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 UNQ9165/PRO28630Q6UXU0 137 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 LITAFQ99732 161 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 A8MUN3 132 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 NTM-AS1Q6ZSK4 140 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 SETD2Q9BYW2 2564 aaPredicted RBP8.52□□□□□ -1.05
NPHP4-202ENST00000378161 DEFB1P60022 68 aa8.52□□□□□ -1.05
NPHP4-202ENST00000378161 IGHV4-61A0A0C4DH41 118 aa8.51□□□□□ -1.05
NPHP4-202ENST00000378161 MAPK1IP1LQ8NDC0 245 aa8.51□□□□□ -1.05
NPHP4-202ENST00000378161 AVPP01185 164 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 IGF1P05019 195 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 HIVEP2P31629 2446 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 C6orf223Q8N319 242 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.5□□□□□ -1.05
NPHP4-202ENST00000378161 HIGD2BQ4VC39 106 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 IGHV4-38-2P0DP08 117 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 C7orf65Q6ZTY9 151 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 ZFAND2AQ8N6M9 145 aa8.5□□□□□ -1.05
NPHP4-202ENST00000378161 RNASE3P12724 160 aaKnown RBP8.49□□□□□ -1.05
NPHP4-202ENST00000378161 ATP11AUNQ6ZP68 121 aa8.49□□□□□ -1.05
NPHP4-202ENST00000378161 LRRK2Q5S007 2527 aa8.49□□□□□ -1.05
NPHP4-202ENST00000378161 HIGD2AQ9BW72 106 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms