RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 TMEM89A2RUT3 159 aa11.31□□□□□ -0.6
CKAP4-201ENST00000378026 PFN2P35080 140 aa11.31□□□□□ -0.6
CKAP4-201ENST00000378026 ITPR1Q14643 2758 aa11.3□□□□□ -0.6
CKAP4-201ENST00000378026 HIST1H4AP62805 103 aaKnown RBP11.3□□□□□ -0.6
CKAP4-201ENST00000378026 C10orf105Q8TEF2 133 aa11.3□□□□□ -0.6
CKAP4-201ENST00000378026 DSCR8Q96T75 97 aa11.3□□□□□ -0.6
CKAP4-201ENST00000378026 KHDC1LQ5JSQ8 128 aa11.3□□□□□ -0.6
CKAP4-201ENST00000378026 TLN2Q9Y4G6 2542 aa11.3□□□□□ -0.6
CKAP4-201ENST00000378026 CCL19Q99731 98 aa11.29□□□□□ -0.6
CKAP4-201ENST00000378026 CDC42SE2Q9NRR3 84 aa11.29□□□□□ -0.6
CKAP4-201ENST00000378026 USP9XQ93008 2570 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-201ENST00000378026 C5orf47Q569G3 176 aa11.29□□□□□ -0.6
CKAP4-201ENST00000378026 MAPK1IP1LQ8NDC0 245 aa11.29□□□□□ -0.6
CKAP4-201ENST00000378026 PRORYQ9H606 182 aa11.29□□□□□ -0.6
CKAP4-201ENST00000378026 FLNCQ14315 2725 aa11.29□□□□□ -0.6
CKAP4-201ENST00000378026 RPL36AP83881 106 aaKnown RBP11.29□□□□□ -0.6
CKAP4-201ENST00000378026 RPL36ALQ969Q0 106 aaKnown RBP11.29□□□□□ -0.6
CKAP4-201ENST00000378026 C11orf68Q9H3H3 251 aaKnown RBP11.29□□□□□ -0.6
CKAP4-201ENST00000378026 UBE2L6O14933 153 aa11.28□□□□□ -0.6
CKAP4-201ENST00000378026 RNF152Q8N8N0 203 aa11.28□□□□□ -0.6
CKAP4-201ENST00000378026 JMJD1CQ15652 2540 aa11.27□□□□□ -0.6
CKAP4-201ENST00000378026 WFDC9Q8NEX5 89 aa11.27□□□□□ -0.6
CKAP4-201ENST00000378026 INSP01308 110 aa11.27□□□□□ -0.61
CKAP4-201ENST00000378026 MAP6D1Q9H9H5 199 aa11.27□□□□□ -0.61
CKAP4-201ENST00000378026 MXRA5Q9NR99 2828 aa11.27□□□□□ -0.61
CKAP4-201ENST00000378026 PAX4O43316 350 aa11.27□□□□□ -0.61
CKAP4-201ENST00000378026 Q6ZTI0 123 aa11.27□□□□□ -0.61
CKAP4-201ENST00000378026 LINC01561Q8N1V8 128 aa11.26□□□□□ -0.61
CKAP4-201ENST00000378026 COX7B2Q8TF08 81 aa11.26□□□□□ -0.61
CKAP4-201ENST00000378026 USP17L23D6RBM5 183 aa11.26□□□□□ -0.61
CKAP4-201ENST00000378026 CCL18P55774 89 aa11.25□□□□□ -0.61
CKAP4-201ENST00000378026 CHD6Q8TD26 2715 aa11.25□□□□□ -0.61
CKAP4-201ENST00000378026 HILS1P60008 231 aa11.25□□□□□ -0.61
CKAP4-201ENST00000378026 SERP2Q8N6R1 65 aa11.25□□□□□ -0.61
CKAP4-201ENST00000378026 DYNLRB2Q8TF09 96 aa11.25□□□□□ -0.61
CKAP4-201ENST00000378026 K7EQD1 137 aa11.24□□□□□ -0.61
CKAP4-201ENST00000378026 PF4P02776 101 aa11.24□□□□□ -0.61
CKAP4-201ENST00000378026 DPH3Q96FX2 82 aa11.24□□□□□ -0.61
CKAP4-201ENST00000378026 LOC100131303A0A0U1RQF7 123 aa11.24□□□□□ -0.61
CKAP4-201ENST00000378026 UCNP55089 124 aa11.24□□□□□ -0.61
CKAP4-201ENST00000378026 PTPN13Q12923 2485 aa11.24□□□□□ -0.61
CKAP4-201ENST00000378026 FBN2P35556 2912 aa11.23□□□□□ -0.61
CKAP4-201ENST00000378026 Q6JHZ5 121 aa11.23□□□□□ -0.61
CKAP4-201ENST00000378026 RNASE1P07998 156 aaKnown RBP11.22□□□□□ -0.61
CKAP4-201ENST00000378026 NIPBLQ6KC79 2804 aaeCLIP11.22□□□□□ -0.61
CKAP4-201ENST00000378026 OXTP01178 125 aa11.22□□□□□ -0.61
CKAP4-201ENST00000378026 B4DSR2 109 aa11.22□□□□□ -0.61
CKAP4-201ENST00000378026 GNLYP22749 145 aa11.22□□□□□ -0.61
CKAP4-201ENST00000378026 TMEM243Q9BU79 118 aa11.22□□□□□ -0.61
CKAP4-201ENST00000378026 OVOL2Q9BRP0 275 aa11.21□□□□□ -0.62
CKAP4-201ENST00000378026 FAM19A3Q7Z5A8 133 aa11.2□□□□□ -0.62
CKAP4-201ENST00000378026 NOP10Q9NPE3 64 aaKnown RBP11.2□□□□□ -0.62
CKAP4-201ENST00000378026 TRAV23DV6A0A075B6W5 121 aa11.2□□□□□ -0.62
CKAP4-201ENST00000378026 H0YGX0 51 aa11.2□□□□□ -0.62
CKAP4-201ENST00000378026 C1orf158Q8N1D5 194 aa11.2□□□□□ -0.62
CKAP4-201ENST00000378026 UPK3BQ9BT76 320 aa11.2□□□□□ -0.62
CKAP4-201ENST00000378026 C4orf26Q17RF5 130 aa11.2□□□□□ -0.62
CKAP4-201ENST00000378026 TMEM258P61165 79 aa11.19□□□□□ -0.62
CKAP4-201ENST00000378026 RPS28P62857 69 aaKnown RBP11.19□□□□□ -0.62
CKAP4-201ENST00000378026 A8MTW9 85 aa11.19□□□□□ -0.62
CKAP4-201ENST00000378026 STHQ8IWL8 128 aa11.18□□□□□ -0.62
CKAP4-201ENST00000378026 CACNA1AO00555 2505 aa11.18□□□□□ -0.62
CKAP4-201ENST00000378026 IGLV4-60A0A075B6I1 120 aa11.18□□□□□ -0.62
CKAP4-201ENST00000378026 MYO18BQ8IUG5 2567 aa11.18□□□□□ -0.62
CKAP4-201ENST00000378026 PRR3P79522 188 aaKnown RBP11.17□□□□□ -0.62
CKAP4-201ENST00000378026 ZNF702PQ9H963 129 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 SONP18583 2426 aaKnown RBP11.17□□□□□ -0.62
CKAP4-201ENST00000378026 FAM19A1Q7Z5A9 133 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 ORMDL1Q9P0S3 153 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 FAM208BQ5VWN6 2430 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 NBL1P41271 181 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 FHL2Q14192 279 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 C11orf44Q8N8P7 122 aa11.17□□□□□ -0.62
CKAP4-201ENST00000378026 CFAP46Q8IYW2 2715 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 GHRHP01286 108 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 PLA2G2AP14555 144 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 HRCT1Q6UXD1 115 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 EPG5Q9HCE0 2579 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 AKAP9Q99996 3911 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 TRGV2A0A075B6R0 118 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 OBSCN-AS1Q96MR7 158 aa11.16□□□□□ -0.62
CKAP4-201ENST00000378026 TRBV10-1A0A0K0K1A3 114 aa11.15□□□□□ -0.62
CKAP4-201ENST00000378026 NF1P21359 2839 aa11.15□□□□□ -0.62
CKAP4-201ENST00000378026 ENHOQ6UWT2 76 aa11.15□□□□□ -0.62
CKAP4-201ENST00000378026 ACACBO00763 2458 aa11.15□□□□□ -0.62
CKAP4-201ENST00000378026 SS18Q15532 418 aa11.15□□□□□ -0.63
CKAP4-201ENST00000378026 DEFB114Q30KQ6 69 aa11.15□□□□□ -0.63
CKAP4-201ENST00000378026 ODF3L2Q3SX64 289 aa11.14□□□□□ -0.63
CKAP4-201ENST00000378026 C6orf226Q5I0X4 101 aa11.14□□□□□ -0.63
CKAP4-201ENST00000378026 CCKP06307 115 aa11.13□□□□□ -0.63
CKAP4-201ENST00000378026 ANKRD17O75179 2603 aaKnown RBP11.12□□□□□ -0.63
CKAP4-201ENST00000378026 ABCA12Q86UK0 2595 aa11.12□□□□□ -0.63
CKAP4-201ENST00000378026 FN1P02751 2386 aaKnown RBP11.12□□□□□ -0.63
CKAP4-201ENST00000378026 C20orf197Q8N268 126 aa11.12□□□□□ -0.63
CKAP4-201ENST00000378026 A0A1W2PRX2 142 aa11.12□□□□□ -0.63
CKAP4-201ENST00000378026 CLPSL2Q6UWE3 100 aa11.12□□□□□ -0.63
CKAP4-201ENST00000378026 IGHV3OR16-9A0A0B4J2B5 98 aa11.11□□□□□ -0.63
CKAP4-201ENST00000378026 IBA57-AS1B1ANH7 110 aa11.11□□□□□ -0.63
CKAP4-201ENST00000378026 NBPF19A0A087WUL8 3843 aa11.11□□□□□ -0.63
CKAP4-201ENST00000378026 TRBV6-4A0A1B0GX49 114 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms