RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PCDH15Q96QU1 1955 aa10.03□□□□□ -0.8
COL4A1-201ENST00000375820 BRI3O95415 125 aa10.03□□□□□ -0.8
COL4A1-201ENST00000375820 ATP5EP2Q5VTU8 51 aa10.02□□□□□ -0.8
COL4A1-201ENST00000375820 C11orf71Q6IPW1 123 aa10.02□□□□□ -0.81
COL4A1-201ENST00000375820 DHRS4-AS1Q9P1J3 65 aa10.02□□□□□ -0.81
COL4A1-201ENST00000375820 ZNF73O43830 326 aaPredicted RBP10.02□□□□□ -0.81
COL4A1-201ENST00000375820 ESRGQ1W209 222 aa10.02□□□□□ -0.81
COL4A1-201ENST00000375820 Q6Q795 121 aa10.02□□□□□ -0.81
COL4A1-201ENST00000375820 LELP1Q5T871 98 aa10.01□□□□□ -0.81
COL4A1-201ENST00000375820 CYSRT1A8MQ03 144 aa10.01□□□□□ -0.81
COL4A1-201ENST00000375820 ARHGAP32A7KAX9 2087 aa10.01□□□□□ -0.81
COL4A1-201ENST00000375820 ZNF706Q9Y5V0 76 aaPredicted RBP10.01□□□□□ -0.81
COL4A1-201ENST00000375820 SRCAPQ6ZRS2 3230 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 DEFB116Q30KQ4 102 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 BDP1A6H8Y1 2624 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 SPINK1P00995 79 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 CDSNQ15517 529 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 SOSTDC1Q6X4U4 206 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 PSMG3-AS1Q96PY0 264 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 C2orf91Q6ZV80 131 aa10□□□□□ -0.81
COL4A1-201ENST00000375820 UNQ6190/PRO20217Q6UXQ8 127 aa9.99□□□□□ -0.81
COL4A1-201ENST00000375820 M0QXV9 152 aa9.99□□□□□ -0.81
COL4A1-201ENST00000375820 TECTAO75443 2155 aa9.99□□□□□ -0.81
COL4A1-201ENST00000375820 CSPG4Q6UVK1 2322 aa9.99□□□□□ -0.81
COL4A1-201ENST00000375820 SERP2Q8N6R1 65 aa9.99□□□□□ -0.81
COL4A1-201ENST00000375820 SPG11Q96JI7 2443 aa9.99□□□□□ -0.81
COL4A1-201ENST00000375820 IGHV6-1A0A0B4J1U7 121 aa9.98□□□□□ -0.81
COL4A1-201ENST00000375820 C10orf25Q5T742 122 aa9.98□□□□□ -0.81
COL4A1-201ENST00000375820 LST1O00453 97 aa9.98□□□□□ -0.81
COL4A1-201ENST00000375820 COX6A2Q02221 97 aa9.98□□□□□ -0.81
COL4A1-201ENST00000375820 V9GYY9 64 aa9.98□□□□□ -0.81
COL4A1-201ENST00000375820 C6orf223Q8N319 242 aa9.97□□□□□ -0.81
COL4A1-201ENST00000375820 PTPN13Q12923 2485 aa9.97□□□□□ -0.81
COL4A1-201ENST00000375820 EBI3Q14213 229 aa9.97□□□□□ -0.81
COL4A1-201ENST00000375820 PYGO1Q9Y3Y4 419 aa9.97□□□□□ -0.81
COL4A1-201ENST00000375820 A0A087WVE0 104 aa9.96□□□□□ -0.81
COL4A1-201ENST00000375820 XGP55808 180 aa9.96□□□□□ -0.81
COL4A1-201ENST00000375820 PCOTHQ58A44 107 aa9.96□□□□□ -0.81
COL4A1-201ENST00000375820 SONP18583 2426 aaKnown RBP9.96□□□□□ -0.81
COL4A1-201ENST00000375820 LINC00694P0DN24 101 aa9.96□□□□□ -0.82
COL4A1-201ENST00000375820 AVPP01185 164 aa9.95□□□□□ -0.82
COL4A1-201ENST00000375820 CDC42SE2Q9NRR3 84 aa9.95□□□□□ -0.82
COL4A1-201ENST00000375820 HCFC1P51610 2035 aa9.94□□□□□ -0.82
COL4A1-201ENST00000375820 A0A087WYN8 130 aa9.94□□□□□ -0.82
COL4A1-201ENST00000375820 LINC00208Q96KT6 92 aa9.94□□□□□ -0.82
COL4A1-201ENST00000375820 NOTCH2Q04721 2471 aa9.94□□□□□ -0.82
COL4A1-201ENST00000375820 MRGPRG-AS1Q2M3A8 158 aa9.94□□□□□ -0.82
COL4A1-201ENST00000375820 KLLNB2CW77 178 aa9.93□□□□□ -0.82
COL4A1-201ENST00000375820 TRBV10-3A0A0K0K1G6 114 aa9.93□□□□□ -0.82
COL4A1-201ENST00000375820 KRTAP10-9P60411 292 aa9.92□□□□□ -0.82
COL4A1-201ENST00000375820 IGLV4-60A0A075B6I1 120 aa9.92□□□□□ -0.82
COL4A1-201ENST00000375820 ZNF580Q9UK33 172 aa9.92□□□□□ -0.82
COL4A1-201ENST00000375820 NUPR2A6NF83 97 aa9.92□□□□□ -0.82
COL4A1-201ENST00000375820 IGLV5-52A0A0A0MRZ9 124 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 LINC01556Q5JQF7 62 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 PLA2G2AP14555 144 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 COX7CP15954 63 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 POLR2KP53803 58 aaKnown RBP9.91□□□□□ -0.82
COL4A1-201ENST00000375820 REG3GQ6UW15 175 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 Q8N6K4 173 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 HIVEP3Q5T1R4 2406 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 ACACBO00763 2458 aa9.91□□□□□ -0.82
COL4A1-201ENST00000375820 IGLV1-40P01703 118 aa9.9□□□□□ -0.82
COL4A1-201ENST00000375820 TRBV7-6A0A0J9YX20 115 aa9.9□□□□□ -0.82
COL4A1-201ENST00000375820 LINC01547P58512 204 aaPredicted RBP9.9□□□□□ -0.82
COL4A1-201ENST00000375820 BEAN1Q3B7T3 259 aa9.9□□□□□ -0.82
COL4A1-201ENST00000375820 C1orf137Q5JT78 98 aa9.9□□□□□ -0.82
COL4A1-201ENST00000375820 Q8IZM0 81 aa9.9□□□□□ -0.82
COL4A1-201ENST00000375820 YPEL4Q96NS1 127 aa9.9□□□□□ -0.82
COL4A1-201ENST00000375820 CUL9Q8IWT3 2517 aa9.9□□□□□ -0.83
COL4A1-201ENST00000375820 A8MTW9 85 aa9.9□□□□□ -0.83
COL4A1-201ENST00000375820 NTM-AS1Q6ZSK4 140 aa9.9□□□□□ -0.83
COL4A1-201ENST00000375820 COX17Q14061 63 aa9.9□□□□□ -0.83
COL4A1-201ENST00000375820 EXPH5Q8NEV8 1989 aa9.89□□□□□ -0.83
COL4A1-201ENST00000375820 NDUFC1O43677 76 aa9.89□□□□□ -0.83
COL4A1-201ENST00000375820 LINC00242Q5T6M2 205 aa9.89□□□□□ -0.83
COL4A1-201ENST00000375820 Q6ZTC4 211 aa9.89□□□□□ -0.83
COL4A1-201ENST00000375820 MRPS36P82909 103 aaKnown RBP9.89□□□□□ -0.83
COL4A1-201ENST00000375820 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.89□□□□□ -0.83
COL4A1-201ENST00000375820 PSPHP1O15172 72 aa9.89□□□□□ -0.83
COL4A1-201ENST00000375820 C1orf195Q5TG92 126 aa9.88□□□□□ -0.83
COL4A1-201ENST00000375820 SBSPONQ8IVN8 264 aa9.88□□□□□ -0.83
COL4A1-201ENST00000375820 Q8N814 137 aa9.88□□□□□ -0.83
COL4A1-201ENST00000375820 TSPEAR-AS2P59090 65 aa9.87□□□□□ -0.83
COL4A1-201ENST00000375820 ATP5EP56381 51 aaPredicted RBP9.87□□□□□ -0.83
COL4A1-201ENST00000375820 LINC00474Q9P2X8 69 aa9.87□□□□□ -0.83
COL4A1-201ENST00000375820 PRRC2AP48634 2157 aaKnown RBP9.87□□□□□ -0.83
COL4A1-201ENST00000375820 ODF3L2Q3SX64 289 aa9.87□□□□□ -0.83
COL4A1-201ENST00000375820 CEP192Q8TEP8 1941 aa9.87□□□□□ -0.83
COL4A1-201ENST00000375820 RPL28P46779 137 aaKnown RBP9.86□□□□□ -0.83
COL4A1-201ENST00000375820 IGIPA6NJ69 53 aa9.85□□□□□ -0.83
COL4A1-201ENST00000375820 RAI1Q7Z5J4 1906 aaPredicted RBP9.85□□□□□ -0.83
COL4A1-201ENST00000375820 Q9BRP9 147 aa9.85□□□□□ -0.83
COL4A1-201ENST00000375820 SMIM1B2RUZ4 78 aa9.85□□□□□ -0.83
COL4A1-201ENST00000375820 ADAMTSL4-AS1Q5T5F5 129 aa9.85□□□□□ -0.83
COL4A1-201ENST00000375820 CHCHD7Q9BUK0 85 aa9.85□□□□□ -0.83
COL4A1-201ENST00000375820 Q6JHZ5 121 aa9.84□□□□□ -0.83
COL4A1-201ENST00000375820 PRYO14603 147 aa9.84□□□□□ -0.83
COL4A1-201ENST00000375820 Q6ZSN1 163 aa9.84□□□□□ -0.83
COL4A1-201ENST00000375820 Q9UF83 564 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms