RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 LRP1BQ9NZR2 4599 aa9.66□□□□□ -0.86
COL9A1-204ENST00000370496 UBE2D1P51668 147 aa9.65□□□□□ -0.86
COL9A1-204ENST00000370496 PMCHL1Q16048 86 aa9.65□□□□□ -0.86
COL9A1-204ENST00000370496 BAGE3Q86Y29 109 aa9.65□□□□□ -0.86
COL9A1-204ENST00000370496 AMELXQ99217 191 aa9.65□□□□□ -0.86
COL9A1-204ENST00000370496 APOMO95445 188 aa9.64□□□□□ -0.87
COL9A1-204ENST00000370496 CNBPP62633 177 aaKnown RBP9.64□□□□□ -0.87
COL9A1-204ENST00000370496 CHCHD1Q96BP2 118 aaKnown RBP9.64□□□□□ -0.87
COL9A1-204ENST00000370496 A0A096LNJ9 63 aa9.63□□□□□ -0.87
COL9A1-204ENST00000370496 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.63□□□□□ -0.87
COL9A1-204ENST00000370496 ZNF561-AS1K7EIQ3 104 aa9.63□□□□□ -0.87
COL9A1-204ENST00000370496 LINC00242Q5T6M2 205 aa9.63□□□□□ -0.87
COL9A1-204ENST00000370496 LCE2AQ5TA79 106 aaPredicted RBP9.63□□□□□ -0.87
COL9A1-204ENST00000370496 IGHV3OR16-9A0A0B4J2B5 98 aa9.63□□□□□ -0.87
COL9A1-204ENST00000370496 ATP6V1G1O75348 118 aa9.62□□□□□ -0.87
COL9A1-204ENST00000370496 HSBP1O75506 76 aa9.62□□□□□ -0.87
COL9A1-204ENST00000370496 SPAG11BQ08648 103 aa9.62□□□□□ -0.87
COL9A1-204ENST00000370496 ORAOV1Q8WV07 137 aa9.62□□□□□ -0.87
COL9A1-204ENST00000370496 LINC00526Q96FQ7 95 aa9.62□□□□□ -0.87
COL9A1-204ENST00000370496 S100A1P23297 94 aa9.61□□□□□ -0.87
COL9A1-204ENST00000370496 HERVK_113P63121 156 aa9.61□□□□□ -0.87
COL9A1-204ENST00000370496 SEC11AP67812 179 aa9.61□□□□□ -0.87
COL9A1-204ENST00000370496 C9orf163Q8N9P6 203 aa9.61□□□□□ -0.87
COL9A1-204ENST00000370496 OR10D4PQ8NGN7 298 aa9.61□□□□□ -0.87
COL9A1-204ENST00000370496 GEMIN7Q9H840 131 aaKnown RBP9.61□□□□□ -0.87
COL9A1-204ENST00000370496 IGHV3-64A0A075B6Q5 118 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 A0A087WZ39 114 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 ATP5LO75964 103 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 SLPIP03973 132 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 NDUFA6P56556 154 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 HAMPP81172 84 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 COX6A2Q02221 97 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 PMVKQ15126 192 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 CARD19Q96LW7 228 aa9.6□□□□□ -0.87
COL9A1-204ENST00000370496 KIAA1109Q2LD37 5005 aa9.59□□□□□ -0.87
COL9A1-204ENST00000370496 IGLV4-69A0A075B6H9 119 aa9.59□□□□□ -0.87
COL9A1-204ENST00000370496 SERF1AO75920 110 aa9.59□□□□□ -0.87
COL9A1-204ENST00000370496 PDZD11Q5EBL8 140 aa9.59□□□□□ -0.87
COL9A1-204ENST00000370496 CST9LQ9H4G1 147 aa9.59□□□□□ -0.87
COL9A1-204ENST00000370496 A0A0J9YXV3 536 aa9.58□□□□□ -0.88
COL9A1-204ENST00000370496 FAM19A3Q7Z5A8 133 aa9.58□□□□□ -0.88
COL9A1-204ENST00000370496 PACRGQ96M98 296 aaPredicted RBP9.58□□□□□ -0.88
COL9A1-204ENST00000370496 CAMK2N2Q96S95 79 aa9.58□□□□□ -0.88
COL9A1-204ENST00000370496 FAM30AQ9NZY2 134 aa9.58□□□□□ -0.88
COL9A1-204ENST00000370496 APOBP04114 4563 aaKnown RBP9.57□□□□□ -0.88
COL9A1-204ENST00000370496 SYCNQ0VAF6 134 aa9.57□□□□□ -0.88
COL9A1-204ENST00000370496 Q6ZSA8 131 aa9.57□□□□□ -0.88
COL9A1-204ENST00000370496 LINC00469Q8N7U9 141 aa9.57□□□□□ -0.88
COL9A1-204ENST00000370496 TINCRA0A1B0GVN0 87 aa9.56□□□□□ -0.88
COL9A1-204ENST00000370496 FAM19A2Q8N3H0 131 aa9.56□□□□□ -0.88
COL9A1-204ENST00000370496 C2orf48Q96LS8 159 aa9.56□□□□□ -0.88
COL9A1-204ENST00000370496 PKIGQ9Y2B9 76 aa9.56□□□□□ -0.88
COL9A1-204ENST00000370496 XGP55808 180 aa9.55□□□□□ -0.88
COL9A1-204ENST00000370496 LINC01561Q8N1V8 128 aa9.55□□□□□ -0.88
COL9A1-204ENST00000370496 CHAC1Q9BUX1 264 aa9.55□□□□□ -0.88
COL9A1-204ENST00000370496 CDKN2A-AS1Q9UH64 79 aa9.55□□□□□ -0.88
COL9A1-204ENST00000370496 LOC100996750A0A140TA64 210 aa9.54□□□□□ -0.88
COL9A1-204ENST00000370496 LINC00310P59036 64 aa9.54□□□□□ -0.88
COL9A1-204ENST00000370496 Q6ZRU5 148 aa9.54□□□□□ -0.88
COL9A1-204ENST00000370496 KRTAP4-6Q9BYQ5 205 aa9.54□□□□□ -0.88
COL9A1-204ENST00000370496 NDUFA1O15239 70 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BKO60814 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BJP06899 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 PRSS2P07478 247 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BOP23527 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BBP33778 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BDP58876 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BCP62807 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST2H2BEQ16778 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.53□□□□□ -0.88
COL9A1-204ENST00000370496 SDIM1Q6ZPB5 146 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 SCXQ7RTU7 201 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BHQ93079 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 IFI27L1Q96BM0 104 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BNQ99877 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HIST1H2BMQ99879 126 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 TOMM7Q9P0U1 55 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 HSPG2P98160 4391 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 RYR1P21817 5038 aa9.53□□□□□ -0.88
COL9A1-204ENST00000370496 IGLC3P0DOY3 106 aa9.52□□□□□ -0.88
COL9A1-204ENST00000370496 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.52□□□□□ -0.88
COL9A1-204ENST00000370496 IGLV5-45A0A087WSX0 123 aa9.51□□□□□ -0.89
COL9A1-204ENST00000370496 IGKV2-24A0A0C4DH68 120 aa9.51□□□□□ -0.89
COL9A1-204ENST00000370496 F8WDY8 70 aa9.51□□□□□ -0.89
COL9A1-204ENST00000370496 H3BRM9 83 aa9.51□□□□□ -0.89
COL9A1-204ENST00000370496 LEPROTL1O95214 131 aa9.51□□□□□ -0.89
COL9A1-204ENST00000370496 HERC2O95714 4834 aa9.51□□□□□ -0.89
COL9A1-204ENST00000370496 SMIM1B2RUZ4 78 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 H0Y8G0 127 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 CHTF8P0CG12 524 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 CHTOPQ9Y3Y2 248 aaKnown RBP9.5□□□□□ -0.89
COL9A1-204ENST00000370496 SPINK8P0C7L1 97 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 CKS1BP61024 79 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 RPL18AQ02543 176 aaKnown RBP9.5□□□□□ -0.89
COL9A1-204ENST00000370496 Q8IZM0 81 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 CIRBP-AS1Q8TBR5 109 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 DPH3Q96FX2 82 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 MRPL35Q9NZE8 188 aaKnown RBP9.5□□□□□ -0.89
COL9A1-204ENST00000370496 HSPB8Q9UJY1 196 aa9.5□□□□□ -0.89
COL9A1-204ENST00000370496 A0A096LNI7 61 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms