RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 MRPL52Q86TS9 123 aaKnown RBP9.94□□□□□ -0.82
SMPDL3A-201ENST00000368440 VAMP8Q9BV40 100 aa9.94□□□□□ -0.82
SMPDL3A-201ENST00000368440 G0S2P27469 103 aa9.93□□□□□ -0.82
SMPDL3A-201ENST00000368440 LINC01545Q5VT33 79 aa9.93□□□□□ -0.82
SMPDL3A-201ENST00000368440 ERASQ7Z444 233 aa9.93□□□□□ -0.82
SMPDL3A-201ENST00000368440 OPRPNQ99935 248 aaPredicted RBP9.93□□□□□ -0.82
SMPDL3A-201ENST00000368440 UBE2D4Q9Y2X8 147 aa9.93□□□□□ -0.82
SMPDL3A-201ENST00000368440 OR5A1Q8NGJ0 315 aa9.92□□□□□ -0.82
SMPDL3A-201ENST00000368440 TMEM101Q96IK0 257 aa9.92□□□□□ -0.82
SMPDL3A-201ENST00000368440 PGPEP1Q9NXJ5 209 aa9.92□□□□□ -0.82
SMPDL3A-201ENST00000368440 LRP1BQ9NZR2 4599 aa9.92□□□□□ -0.82
SMPDL3A-201ENST00000368440 hDV102S1A0JD36 115 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 IGIPA6NJ69 53 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 ZNF664Q8N3J9 261 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 CDC42SE2Q9NRR3 84 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 KIAA1109Q2LD37 5005 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 TRAV8-4A0A0B4J246 113 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 ODF1Q14990 250 aa9.91□□□□□ -0.82
SMPDL3A-201ENST00000368440 SPATA45Q537H7 98 aa9.9□□□□□ -0.82
SMPDL3A-201ENST00000368440 RNASE13Q5GAN3 156 aaKnown RBP9.9□□□□□ -0.82
SMPDL3A-201ENST00000368440 Q6ZUT4 128 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 MRPL35Q9NZE8 188 aaKnown RBP9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 IGLV5-52A0A0A0MRZ9 124 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 USP17L23D6RBM5 183 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 DGAT2L7PQ6IED9 249 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 FAM104AQ969W3 186 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 TMEM141Q96I45 108 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 TIMM17AQ99595 171 aa9.89□□□□□ -0.83
SMPDL3A-201ENST00000368440 NTN5Q8WTR8 489 aaPredicted RBP9.88□□□□□ -0.83
SMPDL3A-201ENST00000368440 TIMM21Q9BVV7 248 aa9.88□□□□□ -0.83
SMPDL3A-201ENST00000368440 CHTOPQ9Y3Y2 248 aaKnown RBP9.88□□□□□ -0.83
SMPDL3A-201ENST00000368440 CSDC2Q9Y534 153 aaKnown RBP9.88□□□□□ -0.83
SMPDL3A-201ENST00000368440 LINC00959A0A1B0GUT2 108 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 GAGE12HA6NDE8 117 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 LINC01549A6NIU2 74 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 KRTAP10-1P60331 282 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 CHCHD10Q8WYQ3 142 aaPredicted RBP9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 IGLV4-3A0A075B6K6 122 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 HSBP1L1C9JCN9 74 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 STPG4Q8N801 248 aa9.87□□□□□ -0.83
SMPDL3A-201ENST00000368440 DPM2O94777 84 aa9.86□□□□□ -0.83
SMPDL3A-201ENST00000368440 IGKCP01834 107 aa9.86□□□□□ -0.83
SMPDL3A-201ENST00000368440 PMVKQ15126 192 aa9.86□□□□□ -0.83
SMPDL3A-201ENST00000368440 TRAV12-1A0A0B4J245 112 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 TSTD3H0UI37 97 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 CCL25O15444 150 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 GCSHP23434 173 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 SMAGPQ0VAQ4 97 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 VCX2Q9H322 139 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 CST9LQ9H4G1 147 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 F8VRH5 84 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 XCL1P47992 114 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 SPANXA1Q9NS26 97 aa9.85□□□□□ -0.83
SMPDL3A-201ENST00000368440 APOBP04114 4563 aaKnown RBP9.84□□□□□ -0.83
SMPDL3A-201ENST00000368440 FOXI1Q12951 378 aa9.84□□□□□ -0.83
SMPDL3A-201ENST00000368440 LINC01620Q4KN68 170 aa9.84□□□□□ -0.83
SMPDL3A-201ENST00000368440 C14orf144Q96I85 54 aa9.84□□□□□ -0.83
SMPDL3A-201ENST00000368440 C14orf177Q52M58 125 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 C15orf56Q8N910 161 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 PYGO1Q9Y3Y4 419 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 MRPS36P82909 103 aaKnown RBP9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 SS18Q15532 418 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 ANKRD39Q53RE8 183 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 TP73-AS1Q9UF72 201 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 HERC2O95714 4834 aa9.83□□□□□ -0.84
SMPDL3A-201ENST00000368440 RYR1P21817 5038 aa9.82□□□□□ -0.84
SMPDL3A-201ENST00000368440 TRAV13-1A0A0B4J241 112 aa9.82□□□□□ -0.84
SMPDL3A-201ENST00000368440 PLNP26678 52 aa9.82□□□□□ -0.84
SMPDL3A-201ENST00000368440 IGLV4-69A0A075B6H9 119 aa9.81□□□□□ -0.84
SMPDL3A-201ENST00000368440 PAPPA-AS1Q5QFB9 102 aa9.81□□□□□ -0.84
SMPDL3A-201ENST00000368440 C11orf86A6NJI1 115 aa9.81□□□□□ -0.84
SMPDL3A-201ENST00000368440 CDK2AP2O75956 126 aa9.81□□□□□ -0.84
SMPDL3A-201ENST00000368440 A0A0J9YXV3 536 aa9.8□□□□□ -0.84
SMPDL3A-201ENST00000368440 CD164L2Q6UWJ8 174 aa9.8□□□□□ -0.84
SMPDL3A-201ENST00000368440 HSPG2P98160 4391 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 NMUP48645 174 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 HIGD2BQ4VC39 106 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 AMELXQ99217 191 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 KRTAP17-1Q9BYP8 105 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 IGLC3P0DOY3 106 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 DDTP30046 118 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 TMEM170BQ5T4T1 132 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 C2orf88Q9BSF0 95 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 CHAC1Q9BUX1 264 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 FAM30AQ9NZY2 134 aa9.79□□□□□ -0.84
SMPDL3A-201ENST00000368440 SLPIP03973 132 aa9.78□□□□□ -0.84
SMPDL3A-201ENST00000368440 HAMPP81172 84 aa9.78□□□□□ -0.84
SMPDL3A-201ENST00000368440 LINC00587B1AMM8 73 aa9.77□□□□□ -0.85
SMPDL3A-201ENST00000368440 XGP55808 180 aa9.77□□□□□ -0.85
SMPDL3A-201ENST00000368440 IGKV2D-26A0A0A0MRZ7 120 aa9.76□□□□□ -0.85
SMPDL3A-201ENST00000368440 MIEN1Q9BRT3 115 aa9.76□□□□□ -0.85
SMPDL3A-201ENST00000368440 DNAH8Q96JB1 4490 aa9.76□□□□□ -0.85
SMPDL3A-201ENST00000368440 CFAP161Q6P656 301 aa9.76□□□□□ -0.85
SMPDL3A-201ENST00000368440 TTTY13Q9BZ97 58 aa9.76□□□□□ -0.85
SMPDL3A-201ENST00000368440 GVQW2A0A096LPI5 108 aaPredicted RBP9.75□□□□□ -0.85
SMPDL3A-201ENST00000368440 NPSP0C0P6 89 aa9.75□□□□□ -0.85
SMPDL3A-201ENST00000368440 C5orf38Q86SI9 138 aa9.75□□□□□ -0.85
SMPDL3A-201ENST00000368440 LINC00526Q96FQ7 95 aa9.75□□□□□ -0.85
SMPDL3A-201ENST00000368440 UQCR10Q9UDW1 63 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms