RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 K7EQD1 137 aa8.68□□□□□ -1.02
CLIP3-201ENST00000360535 SMIM1B2RUZ4 78 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 NHLRC4P0CG21 123 aaPredicted RBP8.67□□□□□ -1.02
CLIP3-201ENST00000360535 NBPF19A0A087WUL8 3843 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 CCL24O00175 119 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 BEAN1Q3B7T3 259 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 TIRAPP58753 221 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 RNF152Q8N8N0 203 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 CITED1Q99966 193 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 EDA2RQ9HAV5 297 aa8.67□□□□□ -1.02
CLIP3-201ENST00000360535 Q9HAA7 133 aa8.66□□□□□ -1.02
CLIP3-201ENST00000360535 DEFB113Q30KQ7 82 aa8.65□□□□□ -1.02
CLIP3-201ENST00000360535 TRGV4A0A0C4DH28 118 aa8.65□□□□□ -1.02
CLIP3-201ENST00000360535 FSHBP01225 129 aa8.65□□□□□ -1.02
CLIP3-201ENST00000360535 H3BT86 120 aa8.65□□□□□ -1.03
CLIP3-201ENST00000360535 PFN2P35080 140 aa8.65□□□□□ -1.03
CLIP3-201ENST00000360535 A8MTW9 85 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 HELZ2Q9BYK8 2649 aaKnown RBP8.64□□□□□ -1.03
CLIP3-201ENST00000360535 LINC00158P58513 81 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 WFDC11Q8NEX6 87 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 CHCHD5Q9BSY4 110 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 TMEM243Q9BU79 118 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 CDC42SE2Q9NRR3 84 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 DNAJC9-AS1A6NH13 148 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 C5orf38Q86SI9 138 aa8.64□□□□□ -1.03
CLIP3-201ENST00000360535 DEFB130BP0DP73 79 aa8.63□□□□□ -1.03
CLIP3-201ENST00000360535 DEFB130AP0DP74 79 aa8.63□□□□□ -1.03
CLIP3-201ENST00000360535 A0A096LPF7 62 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 CLPSL2Q6UWE3 100 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 MIR7-3HGQ8N6C7 128 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 IGLV5-45A0A087WSX0 123 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 IGLV5-39A0A0G2JS06 123 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 TIMM17BO60830 172 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 BAALC-AS2P0C853 105 aa8.62□□□□□ -1.03
CLIP3-201ENST00000360535 DAZ2Q13117 558 aaKnown RBP8.62□□□□□ -1.03
CLIP3-201ENST00000360535 DAZ4Q86SG3 579 aaKnown RBP8.62□□□□□ -1.03
CLIP3-201ENST00000360535 DAZ3Q9NR90 486 aaKnown RBP8.62□□□□□ -1.03
CLIP3-201ENST00000360535 M0QXV9 152 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 COX7A2LO14548 114 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 FAM218AQ96MZ4 157 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 ESM1Q9NQ30 184 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 ITPR2Q14571 2701 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 OR13C6PQ8NH95 151 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 HECTD1Q9ULT8 2610 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 IGLV4-60A0A075B6I1 120 aa8.61□□□□□ -1.03
CLIP3-201ENST00000360535 ATP5G1P05496 136 aa8.59□□□□□ -1.03
CLIP3-201ENST00000360535 F5H768 121 aa8.59□□□□□ -1.03
CLIP3-201ENST00000360535 CRPP02741 224 aa8.59□□□□□ -1.03
CLIP3-201ENST00000360535 TRBV10-1A0A0K0K1A3 114 aa8.59□□□□□ -1.03
CLIP3-201ENST00000360535 GAGE2AQ6NT46 116 aa8.59□□□□□ -1.03
CLIP3-201ENST00000360535 SND1-IT1Q9HBX3 110 aa8.59□□□□□ -1.03
CLIP3-201ENST00000360535 UBR5O95071 2799 aaPredicted RBP8.59□□□□□ -1.03
CLIP3-201ENST00000360535 COX7B2Q8TF08 81 aa8.58□□□□□ -1.04
CLIP3-201ENST00000360535 PAX4O43316 350 aa8.58□□□□□ -1.04
CLIP3-201ENST00000360535 GIG44P09565 113 aaPredicted RBP8.57□□□□□ -1.04
CLIP3-201ENST00000360535 XCL1P47992 114 aa8.57□□□□□ -1.04
CLIP3-201ENST00000360535 LINC00337Q8N6G1 96 aa8.57□□□□□ -1.04
CLIP3-201ENST00000360535 COPS9Q8WXC6 57 aa8.56□□□□□ -1.04
CLIP3-201ENST00000360535 FAM236AA0A1B0GUQ0 79 aa8.56□□□□□ -1.04
CLIP3-201ENST00000360535 FAM236BA0A1B0GV22 79 aa8.56□□□□□ -1.04
CLIP3-201ENST00000360535 DNAL4O96015 105 aa8.56□□□□□ -1.04
CLIP3-201ENST00000360535 SLPIP03973 132 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 FAM110AQ9BQ89 295 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 ZNF843Q8N446 348 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 TRAV25A0A0B4J276 109 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 C6orf226Q5I0X4 101 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 LINC01006Q8NI28 216 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 IL17DQ8TAD2 202 aa8.55□□□□□ -1.04
CLIP3-201ENST00000360535 CSDC2Q9Y534 153 aaKnown RBP8.55□□□□□ -1.04
CLIP3-201ENST00000360535 SMCR5Q8TEV8 140 aa8.54□□□□□ -1.04
CLIP3-201ENST00000360535 C16orf74Q96GX8 76 aa8.54□□□□□ -1.04
CLIP3-201ENST00000360535 A0A087WYN8 130 aa8.54□□□□□ -1.04
CLIP3-201ENST00000360535 DEFB4AO15263 64 aa8.54□□□□□ -1.04
CLIP3-201ENST00000360535 PLAC8L1A1L4L8 177 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 SMIM11BQ8TCY0 68 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 CCL18P55774 89 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 IGKV2-28A0A075B6P5 120 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 TRBV6-8A0A0A6YYG3 113 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 TRAV13-2A0A0B4J235 113 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 IGKV2D-28P01615 120 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 MRPL23Q16540 153 aaKnown RBP8.53□□□□□ -1.04
CLIP3-201ENST00000360535 PPDPFQ9H3Y8 114 aa8.53□□□□□ -1.04
CLIP3-201ENST00000360535 C14orf132Q9NPU4 83 aa8.52□□□□□ -1.05
CLIP3-201ENST00000360535 IGLV10-54A0A075B6I4 117 aa8.52□□□□□ -1.05
CLIP3-201ENST00000360535 RNASE1P07998 156 aaKnown RBP8.52□□□□□ -1.05
CLIP3-201ENST00000360535 PRR3P79522 188 aaKnown RBP8.52□□□□□ -1.05
CLIP3-201ENST00000360535 C9orf129Q5T035 196 aaKnown RBP8.52□□□□□ -1.05
CLIP3-201ENST00000360535 KRTAP1-3Q8IUG1 177 aa8.52□□□□□ -1.05
CLIP3-201ENST00000360535 LECT2O14960 151 aa8.52□□□□□ -1.05
CLIP3-201ENST00000360535 GYPEP15421 78 aa8.52□□□□□ -1.05
CLIP3-201ENST00000360535 VWFP04275 2813 aa8.51□□□□□ -1.05
CLIP3-201ENST00000360535 FHL2Q14192 279 aa8.51□□□□□ -1.05
CLIP3-201ENST00000360535 MALP21145 153 aa8.51□□□□□ -1.05
CLIP3-201ENST00000360535 C9orf153Q5TBE3 101 aa8.51□□□□□ -1.05
CLIP3-201ENST00000360535 Q6Q795 121 aa8.51□□□□□ -1.05
CLIP3-201ENST00000360535 TRACP01848 142 aa8.5□□□□□ -1.05
CLIP3-201ENST00000360535 TRBV6-4A0A1B0GX49 114 aa8.5□□□□□ -1.05
CLIP3-201ENST00000360535 LINC01600Q96MT4 127 aa8.5□□□□□ -1.05
CLIP3-201ENST00000360535 TENM4Q6N022 2769 aa8.5□□□□□ -1.05
CLIP3-201ENST00000360535 FAM240AA0A1B0GVK7 77 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms