RNA–Protein interactions for RNA: ENST00000343483.6

HOXA9-201, Transcript of homeobox A9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA9, Length 2,060 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-201ENST00000343483 A8MZ25 164 aa13.06□□□□□ -0.32
HOXA9-201ENST00000343483 G3V4G9 280 aa13.06□□□□□ -0.32
HOXA9-201ENST00000343483 SMAGPQ0VAQ4 97 aa13.06□□□□□ -0.32
HOXA9-201ENST00000343483 CDKN2A-AS1Q9UH64 79 aa13.06□□□□□ -0.32
HOXA9-201ENST00000343483 PRO1854Q9UHT4 67 aa13.06□□□□□ -0.32
HOXA9-201ENST00000343483 GYPEP15421 78 aa13.06□□□□□ -0.32
HOXA9-201ENST00000343483 MIFP14174 115 aa13.05□□□□□ -0.32
HOXA9-201ENST00000343483 KRTAP10-11P60412 298 aa13.05□□□□□ -0.32
HOXA9-201ENST00000343483 TMEM101Q96IK0 257 aa13.05□□□□□ -0.32
HOXA9-201ENST00000343483 MGAM2Q2M2H8 2515 aa13.05□□□□□ -0.32
HOXA9-201ENST00000343483 IGLV5-45A0A087WSX0 123 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 TRBV6-8A0A0A6YYG3 113 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 MTURNQ8N3F0 131 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 Q8NAQ8 132 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 RNF183Q96D59 192 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 LITAFQ99732 161 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 PRO0255Q9UI72 69 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 TRAV13-1A0A0B4J241 112 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 PSMB2P49721 201 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 LYRM7Q5U5X0 104 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 CDC42SE2Q9NRR3 84 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 PRO0461Q9UI25 63 aa13.04□□□□□ -0.32
HOXA9-201ENST00000343483 TEX48A0A1B0GUV7 120 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 DAD1P61803 113 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 COX6A2Q02221 97 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 GAGE6Q13070 117 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 ZFAND6Q6FIF0 208 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 HERVK_113P63121 156 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 CHCHD5Q9BSY4 110 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 CELA1Q9UNI1 258 aa13.03□□□□□ -0.32
HOXA9-201ENST00000343483 EIF4EBP3O60516 100 aaPredicted RBP13.02□□□□□ -0.33
HOXA9-201ENST00000343483 LINC00242Q5T6M2 205 aa13.02□□□□□ -0.33
HOXA9-201ENST00000343483 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.01□□□□□ -0.33
HOXA9-201ENST00000343483 A0A0B4J2C4 111 aa13.01□□□□□ -0.33
HOXA9-201ENST00000343483 H7C423 109 aa13.01□□□□□ -0.33
HOXA9-201ENST00000343483 ATP6V0E2Q8NHE4 81 aa13.01□□□□□ -0.33
HOXA9-201ENST00000343483 PAX4O43316 350 aa13.01□□□□□ -0.33
HOXA9-201ENST00000343483 PRSS2P07478 247 aa13.01□□□□□ -0.33
HOXA9-201ENST00000343483 ADAMTSL4-AS1Q5T5F5 129 aa13.01□□□□□ -0.33
HOXA9-201ENST00000343483 FAM19A3Q7Z5A8 133 aa13□□□□□ -0.33
HOXA9-201ENST00000343483 SPANXDQ9BXN6 97 aa13□□□□□ -0.33
HOXA9-201ENST00000343483 SPANXCQ9NY87 97 aa13□□□□□ -0.33
HOXA9-201ENST00000343483 A0A096LPF7 62 aa13□□□□□ -0.33
HOXA9-201ENST00000343483 ETDBQ3ZM63 59 aa13□□□□□ -0.33
HOXA9-201ENST00000343483 SH2D6Q7Z4S9 175 aa13□□□□□ -0.33
HOXA9-201ENST00000343483 IGHV3-33P01772 117 aa12.99□□□□□ -0.33
HOXA9-201ENST00000343483 ERG28Q9UKR5 140 aa12.99□□□□□ -0.33
HOXA9-201ENST00000343483 SPART-AS1P0CW21 52 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 SCGB1C2P0DMR2 95 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 EGFEM1PQ0D2K5 195 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 MIAQ16674 131 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 H7C2G1 150 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 NDUFA1O15239 70 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 TCL1BO95988 128 aa12.98□□□□□ -0.33
HOXA9-201ENST00000343483 TRBV20-1A0A075B6N2 111 aa12.97□□□□□ -0.33
HOXA9-201ENST00000343483 IGLV4-60A0A075B6I1 120 aa12.97□□□□□ -0.33
HOXA9-201ENST00000343483 IGLV5-39A0A0G2JS06 123 aa12.97□□□□□ -0.33
HOXA9-201ENST00000343483 ATP5G1P05496 136 aa12.97□□□□□ -0.33
HOXA9-201ENST00000343483 IGKV3OR2-268A0A0C4DH90 116 aa12.96□□□□□ -0.33
HOXA9-201ENST00000343483 TIMM17BO60830 172 aa12.96□□□□□ -0.33
HOXA9-201ENST00000343483 NPC2P61916 151 aa12.96□□□□□ -0.33
HOXA9-201ENST00000343483 HTN3P15516 51 aa12.95□□□□□ -0.34
HOXA9-201ENST00000343483 NOTCH1P46531 2555 aa12.95□□□□□ -0.34
HOXA9-201ENST00000343483 SMIM1B2RUZ4 78 aa12.95□□□□□ -0.34
HOXA9-201ENST00000343483 F5H768 121 aa12.95□□□□□ -0.34
HOXA9-201ENST00000343483 Q1RN00 199 aa12.95□□□□□ -0.34
HOXA9-201ENST00000343483 RETNQ9HD89 108 aa12.95□□□□□ -0.34
HOXA9-201ENST00000343483 TRAV26-1A0A087WT03 109 aa12.94□□□□□ -0.34
HOXA9-201ENST00000343483 SMCPP49901 116 aaPredicted RBP12.94□□□□□ -0.34
HOXA9-201ENST00000343483 FBN3Q75N90 2809 aa12.94□□□□□ -0.34
HOXA9-201ENST00000343483 Q9H8V8 135 aa12.93□□□□□ -0.34
HOXA9-201ENST00000343483 TMEM262E9PQX1 116 aa12.93□□□□□ -0.34
HOXA9-201ENST00000343483 J3QR89 54 aa12.92□□□□□ -0.34
HOXA9-201ENST00000343483 CIRBPQ14011 172 aaKnown RBP12.92□□□□□ -0.34
HOXA9-201ENST00000343483 DAND5Q8N907 189 aa12.92□□□□□ -0.34
HOXA9-201ENST00000343483 IFITM1P13164 125 aa12.91□□□□□ -0.34
HOXA9-201ENST00000343483 ZNF625Q96I27 306 aaPredicted RBP12.9□□□□□ -0.34
HOXA9-201ENST00000343483 TRBV30A0A0K0K1B3 111 aa12.87□□□□□ -0.35
HOXA9-201ENST00000343483 MEGF8Q7Z7M0 2845 aa12.87□□□□□ -0.35
HOXA9-201ENST00000343483 A0A0U1RRA0 63 aa12.86□□□□□ -0.35
HOXA9-201ENST00000343483 TRIAP1O43715 76 aa12.86□□□□□ -0.35
HOXA9-201ENST00000343483 A0A1B0GUV1 79 aa12.85□□□□□ -0.35
HOXA9-201ENST00000343483 MRPL23Q16540 153 aaKnown RBP12.85□□□□□ -0.35
HOXA9-201ENST00000343483 MEIG1Q5JSS6 88 aa12.85□□□□□ -0.35
HOXA9-201ENST00000343483 LINC00308Q8TCZ7 52 aa12.85□□□□□ -0.35
HOXA9-201ENST00000343483 FOXI1Q12951 378 aa12.85□□□□□ -0.35
HOXA9-201ENST00000343483 ICOSQ9Y6W8 199 aa12.85□□□□□ -0.35
HOXA9-201ENST00000343483 LINC00959A0A1B0GUT2 108 aa12.84□□□□□ -0.35
HOXA9-201ENST00000343483 ATXN8Q156A1 80 aa12.84□□□□□ -0.35
HOXA9-201ENST00000343483 CLPSL2Q6UWE3 100 aa12.84□□□□□ -0.35
HOXA9-201ENST00000343483 HERV-K104P63124 156 aa12.84□□□□□ -0.35
HOXA9-201ENST00000343483 C9JAW5 83 aa12.83□□□□□ -0.36
HOXA9-201ENST00000343483 TEN1Q86WV5 123 aa12.83□□□□□ -0.36
HOXA9-201ENST00000343483 IGHV3OR16-9A0A0B4J2B5 98 aa12.82□□□□□ -0.36
HOXA9-201ENST00000343483 RPL13AP40429 203 aaKnown RBP12.82□□□□□ -0.36
HOXA9-201ENST00000343483 SLC25A20O43772 301 aa12.82□□□□□ -0.36
HOXA9-201ENST00000343483 COPS9Q8WXC6 57 aa12.82□□□□□ -0.36
HOXA9-201ENST00000343483 Q8N3U1 123 aa12.81□□□□□ -0.36
HOXA9-201ENST00000343483 COX7B2Q8TF08 81 aa12.81□□□□□ -0.36
HOXA9-201ENST00000343483 PRB2P02812 416 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms