RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 ITPR2Q14571 2701 aa13□□□□□ -0.33
CLSTN3-202ENST00000331148 PSMB8P28062 276 aa13□□□□□ -0.33
CLSTN3-202ENST00000331148 PRIMA1Q86XR5 153 aa13□□□□□ -0.33
CLSTN3-202ENST00000331148 Q9HAA7 133 aa13□□□□□ -0.33
CLSTN3-202ENST00000331148 UNC79Q9P2D8 2635 aa13□□□□□ -0.33
CLSTN3-202ENST00000331148 MALP21145 153 aa12.99□□□□□ -0.33
CLSTN3-202ENST00000331148 PIK3CD-AS1Q5SR53 167 aa12.99□□□□□ -0.33
CLSTN3-202ENST00000331148 ZNF469Q96JG9 3925 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-202ENST00000331148 IGHV3-53P01767 116 aa12.99□□□□□ -0.33
CLSTN3-202ENST00000331148 FAM19A5Q7Z5A7 132 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-202ENST00000331148 ZNF415Q09FC8 603 aa12.98□□□□□ -0.33
CLSTN3-202ENST00000331148 SYNJ2BPP57105 145 aa12.97□□□□□ -0.33
CLSTN3-202ENST00000331148 C5orf47Q569G3 176 aa12.97□□□□□ -0.33
CLSTN3-202ENST00000331148 MXRA5Q9NR99 2828 aa12.97□□□□□ -0.33
CLSTN3-202ENST00000331148 NACAE9PAV3 2078 aa12.97□□□□□ -0.33
CLSTN3-202ENST00000331148 hADV29S1A0JD25 119 aa12.97□□□□□ -0.33
CLSTN3-202ENST00000331148 C10orf99Q6UWK7 81 aa12.97□□□□□ -0.33
CLSTN3-202ENST00000331148 HIST2H2BDQ6DRA6 164 aa12.96□□□□□ -0.33
CLSTN3-202ENST00000331148 SMIM9A6NGZ8 99 aa12.96□□□□□ -0.34
CLSTN3-202ENST00000331148 KRTAP1-1Q07627 177 aa12.96□□□□□ -0.34
CLSTN3-202ENST00000331148 FAM19A3Q7Z5A8 133 aa12.96□□□□□ -0.34
CLSTN3-202ENST00000331148 HOXD3P31249 432 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 FLNAP21333 2647 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 DNAL4O96015 105 aa12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 RPL28P46779 137 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 RPS28P62857 69 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 RPL18AQ02543 176 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 CYSTM1Q9H1C7 97 aa12.95□□□□□ -0.34
CLSTN3-202ENST00000331148 TRAV13-1A0A0B4J241 112 aa12.94□□□□□ -0.34
CLSTN3-202ENST00000331148 RBMY1BA6NDE4 496 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-202ENST00000331148 RBMY1EA6NEQ0 496 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-202ENST00000331148 RBMY1DP0C7P1 496 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-202ENST00000331148 ZNF702PQ9H963 129 aa12.94□□□□□ -0.34
CLSTN3-202ENST00000331148 TRAV13-2A0A0B4J235 113 aa12.93□□□□□ -0.34
CLSTN3-202ENST00000331148 TMEM89A2RUT3 159 aa12.93□□□□□ -0.34
CLSTN3-202ENST00000331148 F5H768 121 aa12.92□□□□□ -0.34
CLSTN3-202ENST00000331148 CRPP02741 224 aa12.92□□□□□ -0.34
CLSTN3-202ENST00000331148 PF4P02776 101 aa12.92□□□□□ -0.34
CLSTN3-202ENST00000331148 TMEM86BQ8N661 226 aa12.92□□□□□ -0.34
CLSTN3-202ENST00000331148 DEFB131AP59861 70 aa12.92□□□□□ -0.34
CLSTN3-202ENST00000331148 C11orf72Q8NBR9 251 aa12.92□□□□□ -0.34
CLSTN3-202ENST00000331148 TLN2Q9Y4G6 2542 aa12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 A8MTW9 85 aa12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 RS1O15537 224 aa12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 C9orf129Q5T035 196 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 Q6JHZ5 121 aa12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 OVOL2Q9BRP0 275 aa12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 C14orf132Q9NPU4 83 aa12.91□□□□□ -0.34
CLSTN3-202ENST00000331148 IGKV3D-7A0A0C4DH55 119 aa12.9□□□□□ -0.34
CLSTN3-202ENST00000331148 LINC00337Q8N6G1 96 aa12.9□□□□□ -0.34
CLSTN3-202ENST00000331148 HECTD1Q9ULT8 2610 aa12.9□□□□□ -0.34
CLSTN3-202ENST00000331148 A0A087WYN8 130 aa12.9□□□□□ -0.35
CLSTN3-202ENST00000331148 IGKV2-28A0A075B6P5 120 aa12.88□□□□□ -0.35
CLSTN3-202ENST00000331148 IGKV2D-28P01615 120 aa12.88□□□□□ -0.35
CLSTN3-202ENST00000331148 TMEM258P61165 79 aa12.88□□□□□ -0.35
CLSTN3-202ENST00000331148 OR13C6PQ8NH95 151 aa12.88□□□□□ -0.35
CLSTN3-202ENST00000331148 LINC00846Q9NV44 126 aa12.88□□□□□ -0.35
CLSTN3-202ENST00000331148 SERP2Q8N6R1 65 aa12.87□□□□□ -0.35
CLSTN3-202ENST00000331148 OBSCN-AS1Q96MR7 158 aa12.87□□□□□ -0.35
CLSTN3-202ENST00000331148 UPK3BQ9BT76 320 aa12.87□□□□□ -0.35
CLSTN3-202ENST00000331148 AKAP9Q99996 3911 aa12.87□□□□□ -0.35
CLSTN3-202ENST00000331148 DNAJC9-AS1A6NH13 148 aa12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 SORL1Q92673 2214 aa12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 SONP18583 2426 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 A0A087WVE0 104 aa12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 KIR2DL5BQ8NHK3 375 aa12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 SMIM11BQ8TCY0 68 aa12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 SND1-IT1Q9HBX3 110 aa12.86□□□□□ -0.35
CLSTN3-202ENST00000331148 MIR7-3HGQ8N6C7 128 aa12.85□□□□□ -0.35
CLSTN3-202ENST00000331148 ACANP16112 2415 aa12.85□□□□□ -0.35
CLSTN3-202ENST00000331148 BAHCC1Q9P281 2608 aa12.85□□□□□ -0.35
CLSTN3-202ENST00000331148 DPH3Q96FX2 82 aa12.85□□□□□ -0.35
CLSTN3-202ENST00000331148 CDC42SE2Q9NRR3 84 aa12.85□□□□□ -0.35
CLSTN3-202ENST00000331148 NTM-AS1Q6ZSK4 140 aa12.84□□□□□ -0.35
CLSTN3-202ENST00000331148 LINC01561Q8N1V8 128 aa12.83□□□□□ -0.35
CLSTN3-202ENST00000331148 UBE2E2Q96LR5 201 aa12.83□□□□□ -0.35
CLSTN3-202ENST00000331148 ESM1Q9NQ30 184 aa12.83□□□□□ -0.35
CLSTN3-202ENST00000331148 USP17L23D6RBM5 183 aa12.82□□□□□ -0.36
CLSTN3-202ENST00000331148 SMR3AQ99954 134 aa12.82□□□□□ -0.36
CLSTN3-202ENST00000331148 H0YGX0 51 aa12.82□□□□□ -0.36
CLSTN3-202ENST00000331148 INSP01308 110 aa12.81□□□□□ -0.36
CLSTN3-202ENST00000331148 MYO9AB2RTY4 2548 aa12.81□□□□□ -0.36
CLSTN3-202ENST00000331148 NCR3O14931 201 aa12.8□□□□□ -0.36
CLSTN3-202ENST00000331148 LECT2O14960 151 aa12.8□□□□□ -0.36
CLSTN3-202ENST00000331148 RPL36AP83881 106 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-202ENST00000331148 COX7B2Q8TF08 81 aa12.8□□□□□ -0.36
CLSTN3-202ENST00000331148 RPL36ALQ969Q0 106 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-202ENST00000331148 OXTP01178 125 aa12.79□□□□□ -0.36
CLSTN3-202ENST00000331148 DSCR8Q96T75 97 aa12.79□□□□□ -0.36
CLSTN3-202ENST00000331148 K7EQD1 137 aa12.78□□□□□ -0.36
CLSTN3-202ENST00000331148 LY6G6DO95868 133 aa12.78□□□□□ -0.36
CLSTN3-202ENST00000331148 SLURP1P55000 103 aa12.78□□□□□ -0.36
CLSTN3-202ENST00000331148 CCL18P55774 89 aa12.78□□□□□ -0.36
CLSTN3-202ENST00000331148 MAP6D1Q9H9H5 199 aa12.78□□□□□ -0.36
CLSTN3-202ENST00000331148 LINC00158P58513 81 aa12.77□□□□□ -0.36
CLSTN3-202ENST00000331148 TRGV1A0A0A0MS02 117 aa12.77□□□□□ -0.37
CLSTN3-202ENST00000331148 TRBV10-1A0A0K0K1A3 114 aa12.77□□□□□ -0.37
CLSTN3-202ENST00000331148 RNASE1P07998 156 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-202ENST00000331148 TOMM7Q9P0U1 55 aa12.77□□□□□ -0.37
CLSTN3-202ENST00000331148 WIPF1O43516 503 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms