RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 VSIG2Q96IQ7 327 aa7.02□□□□□ -1.29
HMGB3-201ENST00000325307 H3BMG7 143 aa7.02□□□□□ -1.29
HMGB3-201ENST00000325307 K7EMI3 77 aa7.02□□□□□ -1.29
HMGB3-201ENST00000325307 TRBV20-1A0A075B6N2 111 aa7.01□□□□□ -1.29
HMGB3-201ENST00000325307 TINCRA0A1B0GVN0 87 aa7.01□□□□□ -1.29
HMGB3-201ENST00000325307 K7ERJ3 54 aa7.01□□□□□ -1.29
HMGB3-201ENST00000325307 SMCPP49901 116 aaPredicted RBP7.01□□□□□ -1.29
HMGB3-201ENST00000325307 TRBV25-1A0A075B6N4 114 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 IFITM1P13164 125 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 C1orf43Q9BWL3 253 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 MRPL35Q9NZE8 188 aaKnown RBP7□□□□□ -1.29
HMGB3-201ENST00000325307 C2orf66Q6UXQ4 117 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 ICOSQ9Y6W8 199 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 STAB2Q8WWQ8 2551 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 TRAV10A0A0B4J240 114 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 PRSS1P07477 247 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 TTTY13Q9BZ97 58 aa7□□□□□ -1.29
HMGB3-201ENST00000325307 ATP5LO75964 103 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 TIRAPP58753 221 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 RPL39P62891 51 aaKnown RBP6.99□□□□□ -1.29
HMGB3-201ENST00000325307 IGKCP01834 107 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 PRO0628Q9UI54 55 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 COL7A1Q02388 2944 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 NFE4Q86UQ8 179 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 BAALCQ8WXS3 180 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 SCGB3A1Q96QR1 104 aa6.99□□□□□ -1.29
HMGB3-201ENST00000325307 MALP21145 153 aa6.98□□□□□ -1.29
HMGB3-201ENST00000325307 GCSHP23434 173 aa6.98□□□□□ -1.29
HMGB3-201ENST00000325307 V9GYY9 64 aa6.98□□□□□ -1.29
HMGB3-201ENST00000325307 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.98□□□□□ -1.29
HMGB3-201ENST00000325307 IGKV2-29A2NJV5 120 aaPredicted RBP6.98□□□□□ -1.29
HMGB3-201ENST00000325307 TRAV12-1A0A0B4J245 112 aa6.98□□□□□ -1.29
HMGB3-201ENST00000325307 C20orf203Q8NBC4 194 aa6.98□□□□□ -1.29
HMGB3-201ENST00000325307 IGIPA6NJ69 53 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 UBE2L6O14933 153 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 DPM2O94777 84 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 APOMO95445 188 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 NMUP48645 174 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 Q5XG85 94 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 NTM-AS1Q6ZSK4 140 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 A0A0U1RRA0 63 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 ZNF561-AS1K7EIQ3 104 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 ZC2HC1BQ5TFG8 222 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 CHCHD5Q9BSY4 110 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 TMEM243Q9BU79 118 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 CHCHD7Q9BUK0 85 aa6.97□□□□□ -1.29
HMGB3-201ENST00000325307 NHP2Q9NX24 153 aaKnown RBP6.97□□□□□ -1.29
HMGB3-201ENST00000325307 TRBV6-8A0A0A6YYG3 113 aa6.96□□□□□ -1.29
HMGB3-201ENST00000325307 CARD19Q96LW7 228 aa6.96□□□□□ -1.29
HMGB3-201ENST00000325307 LINC01600Q96MT4 127 aa6.96□□□□□ -1.29
HMGB3-201ENST00000325307 HUWE1Q7Z6Z7 4374 aaKnown RBP6.96□□□□□ -1.3
HMGB3-201ENST00000325307 F8VRH5 84 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 H3BNG1 76 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 DGAT2L7PQ6IED9 249 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 IGLV4-69A0A075B6H9 119 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 LINC01549A6NIU2 74 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 GAGE2BQ13066 116 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 C4orf26Q17RF5 130 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 GAGE2EQ4V326 116 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 C6orf226Q5I0X4 101 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 CEMP1Q6PRD7 247 aaPredicted RBP6.95□□□□□ -1.3
HMGB3-201ENST00000325307 MAPKAPK5-AS1Q8N8E1 139 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 GAGE2DQ9UEU5 116 aa6.95□□□□□ -1.3
HMGB3-201ENST00000325307 FAM104AQ969W3 186 aa6.94□□□□□ -1.3
HMGB3-201ENST00000325307 TMEM262E9PQX1 116 aa6.94□□□□□ -1.3
HMGB3-201ENST00000325307 PLNP26678 52 aa6.94□□□□□ -1.3
HMGB3-201ENST00000325307 PRKDCP78527 4128 aaKnown RBP6.94□□□□□ -1.3
HMGB3-201ENST00000325307 TTC32Q5I0X7 151 aa6.94□□□□□ -1.3
HMGB3-201ENST00000325307 OPRPNQ99935 248 aaPredicted RBP6.94□□□□□ -1.3
HMGB3-201ENST00000325307 FBN3Q75N90 2809 aa6.94□□□□□ -1.3
HMGB3-201ENST00000325307 HRCT1Q6UXD1 115 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 C15orf53Q8NAA6 179 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 PPDPFLQ8WWR9 84 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 TMEM141Q96I45 108 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 DNAH9Q9NYC9 4486 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 UBE2D1P51668 147 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 RNASE13Q5GAN3 156 aaKnown RBP6.93□□□□□ -1.3
HMGB3-201ENST00000325307 TEN1Q86WV5 123 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 TIMM17AQ99595 171 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 UBE2D4Q9Y2X8 147 aa6.93□□□□□ -1.3
HMGB3-201ENST00000325307 LYPD5Q6UWN5 251 aa6.92□□□□□ -1.3
HMGB3-201ENST00000325307 SPANXCQ9NY87 97 aa6.92□□□□□ -1.3
HMGB3-201ENST00000325307 LELP1Q5T871 98 aa6.92□□□□□ -1.3
HMGB3-201ENST00000325307 C11orf86A6NJI1 115 aa6.91□□□□□ -1.3
HMGB3-201ENST00000325307 PAPPA-AS1Q5QFB9 102 aa6.91□□□□□ -1.3
HMGB3-201ENST00000325307 IGLV4-3A0A075B6K6 122 aa6.91□□□□□ -1.3
HMGB3-201ENST00000325307 HERVK_113P63121 156 aa6.91□□□□□ -1.3
HMGB3-201ENST00000325307 PYGO1Q9Y3Y4 419 aa6.91□□□□□ -1.3
HMGB3-201ENST00000325307 H7C423 109 aa6.9□□□□□ -1.3
HMGB3-201ENST00000325307 ESRGQ1W209 222 aa6.9□□□□□ -1.3
HMGB3-201ENST00000325307 PMVKQ15126 192 aa6.9□□□□□ -1.31
HMGB3-201ENST00000325307 IGKV3OR2-268A0A0C4DH90 116 aa6.89□□□□□ -1.31
HMGB3-201ENST00000325307 NUPR2A6NF83 97 aa6.89□□□□□ -1.31
HMGB3-201ENST00000325307 LINC00336Q6ZUF6 198 aa6.89□□□□□ -1.31
HMGB3-201ENST00000325307 TIMM21Q9BVV7 248 aa6.89□□□□□ -1.31
HMGB3-201ENST00000325307 KLK5Q9Y337 293 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-201ENST00000325307 OXTP01178 125 aa6.89□□□□□ -1.31
HMGB3-201ENST00000325307 CCL18P55774 89 aa6.89□□□□□ -1.31
HMGB3-201ENST00000325307 IGLV4-60A0A075B6I1 120 aa6.88□□□□□ -1.31
HMGB3-201ENST00000325307 TSPEAR-AS2P59090 65 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms