RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 IGHV1-58A0A0C4DH39 117 aa11.19□□□□□ -0.62
SHROOM1-201ENST00000319854 MRPS36P82909 103 aaKnown RBP11.19□□□□□ -0.62
SHROOM1-201ENST00000319854 CSDC2Q9Y534 153 aaKnown RBP11.19□□□□□ -0.62
SHROOM1-201ENST00000319854 TMEM126AQ9H061 195 aa11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 A0A0U1RRA0 63 aa11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 LOC107984640A0A0U1RRK4 108 aa11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 J3QKU1 62 aa11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 KLK5Q9Y337 293 aaPredicted RBP11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 KMT2BQ9UMN6 2715 aaPredicted RBP11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 KRTAP1-1Q07627 177 aa11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 TMEM101Q96IK0 257 aa11.18□□□□□ -0.62
SHROOM1-201ENST00000319854 SPANXA1Q9NS26 97 aa11.17□□□□□ -0.62
SHROOM1-201ENST00000319854 VSIG2Q96IQ7 327 aa11.17□□□□□ -0.62
SHROOM1-201ENST00000319854 C5orf47Q569G3 176 aa11.16□□□□□ -0.62
SHROOM1-201ENST00000319854 C11orf72Q8NBR9 251 aa11.16□□□□□ -0.62
SHROOM1-201ENST00000319854 Q6ZTI0 123 aa11.16□□□□□ -0.62
SHROOM1-201ENST00000319854 C1orf158Q8N1D5 194 aa11.16□□□□□ -0.62
SHROOM1-201ENST00000319854 LINC00467Q9BRT7 94 aa11.15□□□□□ -0.62
SHROOM1-201ENST00000319854 NSD1Q96L73 2696 aaPredicted RBP11.15□□□□□ -0.62
SHROOM1-201ENST00000319854 TMEM86BQ8N661 226 aa11.14□□□□□ -0.63
SHROOM1-201ENST00000319854 NOP10Q9NPE3 64 aaKnown RBP11.14□□□□□ -0.63
SHROOM1-201ENST00000319854 C9orf153Q5TBE3 101 aa11.14□□□□□ -0.63
SHROOM1-201ENST00000319854 HIVEP1P15822 2718 aa11.14□□□□□ -0.63
SHROOM1-201ENST00000319854 C3orf22Q8N5N4 141 aa11.13□□□□□ -0.63
SHROOM1-201ENST00000319854 ZNF625Q96I27 306 aaPredicted RBP11.13□□□□□ -0.63
SHROOM1-201ENST00000319854 DGAT2L7PQ6IED9 249 aa11.12□□□□□ -0.63
SHROOM1-201ENST00000319854 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.12□□□□□ -0.63
SHROOM1-201ENST00000319854 PYGO1Q9Y3Y4 419 aa11.12□□□□□ -0.63
SHROOM1-201ENST00000319854 NDUFA7O95182 113 aa11.12□□□□□ -0.63
SHROOM1-201ENST00000319854 TRRAPQ9Y4A5 3859 aa11.11□□□□□ -0.63
SHROOM1-201ENST00000319854 C22orf24Q9Y442 160 aa11.11□□□□□ -0.63
SHROOM1-201ENST00000319854 HERVK_113P63121 156 aa11.11□□□□□ -0.63
SHROOM1-201ENST00000319854 DAZ2Q13117 558 aaKnown RBP11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 DAZ4Q86SG3 579 aaKnown RBP11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 IMUPQ9GZP8 106 aa11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 DAZ3Q9NR90 486 aaKnown RBP11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 CDKN2A-AS1Q9UH64 79 aa11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 TEP1Q99973 2627 aaKnown RBP11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 TINCRA0A1B0GVN0 87 aa11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 A8MTW9 85 aa11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 CHCHD7Q9BUK0 85 aa11.1□□□□□ -0.63
SHROOM1-201ENST00000319854 TRGV2A0A075B6R0 118 aa11.09□□□□□ -0.63
SHROOM1-201ENST00000319854 SMIM9A6NGZ8 99 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 LINC00643Q86TS7 51 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 DNAJC30Q96LL9 226 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 IGKV3OR2-268A0A0C4DH90 116 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 SOSTDC1Q6X4U4 206 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 UBE2D4Q9Y2X8 147 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 LOC100131303A0A0U1RQF7 123 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 ACYP1P07311 99 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 RNASE1P07998 156 aaKnown RBP11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 LINC00308Q8TCZ7 52 aa11.08□□□□□ -0.64
SHROOM1-201ENST00000319854 UQCRQO14949 82 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 COX6A2Q02221 97 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 FAM218AQ96MZ4 157 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 TRAV13-1A0A0B4J241 112 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 COX7A2LO14548 114 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 BEAN1Q3B7T3 259 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 LINC00526Q96FQ7 95 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 CYSTM1Q9H1C7 97 aa11.07□□□□□ -0.64
SHROOM1-201ENST00000319854 SDIM1Q6ZPB5 146 aa11.06□□□□□ -0.64
SHROOM1-201ENST00000319854 RS1O15537 224 aa11.06□□□□□ -0.64
SHROOM1-201ENST00000319854 PF4P02776 101 aa11.06□□□□□ -0.64
SHROOM1-201ENST00000319854 BAALC-AS2P0C853 105 aa11.06□□□□□ -0.64
SHROOM1-201ENST00000319854 TIRAPP58753 221 aa11.06□□□□□ -0.64
SHROOM1-201ENST00000319854 GIG44P09565 113 aaPredicted RBP11.05□□□□□ -0.64
SHROOM1-201ENST00000319854 C2orf48Q96LS8 159 aa11.05□□□□□ -0.64
SHROOM1-201ENST00000319854 TRAV25A0A0B4J276 109 aa11.05□□□□□ -0.64
SHROOM1-201ENST00000319854 C5orf38Q86SI9 138 aa11.05□□□□□ -0.64
SHROOM1-201ENST00000319854 TIMM17BO60830 172 aa11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 Q9H8V8 135 aa11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 NDUFA1O15239 70 aa11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 DEFB130BP0DP73 79 aa11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 DEFB130AP0DP74 79 aa11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 FAM19A5Q7Z5A7 132 aaPredicted RBP11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 SPATA3Q8NHX4 192 aa11.04□□□□□ -0.64
SHROOM1-201ENST00000319854 Q9HAA7 133 aa11.03□□□□□ -0.64
SHROOM1-201ENST00000319854 HILS1P60008 231 aa11.03□□□□□ -0.64
SHROOM1-201ENST00000319854 KRTAP10-3P60369 221 aa11.03□□□□□ -0.64
SHROOM1-201ENST00000319854 RPL36AP83881 106 aaKnown RBP11.02□□□□□ -0.64
SHROOM1-201ENST00000319854 RPL36ALQ969Q0 106 aaKnown RBP11.02□□□□□ -0.64
SHROOM1-201ENST00000319854 LY6G6DO95868 133 aa11.02□□□□□ -0.65
SHROOM1-201ENST00000319854 GAGE2AQ6NT46 116 aa11.02□□□□□ -0.65
SHROOM1-201ENST00000319854 INAFM1C9JVW0 142 aa11.02□□□□□ -0.65
SHROOM1-201ENST00000319854 IGLV1-51P01701 117 aa11.02□□□□□ -0.65
SHROOM1-201ENST00000319854 COX7CP15954 63 aa11.02□□□□□ -0.65
SHROOM1-201ENST00000319854 EDA2RQ9HAV5 297 aa11.02□□□□□ -0.65
SHROOM1-201ENST00000319854 K7EQD1 137 aa11.01□□□□□ -0.65
SHROOM1-201ENST00000319854 C9orf129Q5T035 196 aaKnown RBP11.01□□□□□ -0.65
SHROOM1-201ENST00000319854 hADV29S1A0JD25 119 aa11.01□□□□□ -0.65
SHROOM1-201ENST00000319854 NTM-AS1Q6ZSK4 140 aa11.01□□□□□ -0.65
SHROOM1-201ENST00000319854 F8P00451 2351 aa11.01□□□□□ -0.65
SHROOM1-201ENST00000319854 TRGV4A0A0C4DH28 118 aa11□□□□□ -0.65
SHROOM1-201ENST00000319854 DEFB4AO15263 64 aa11□□□□□ -0.65
SHROOM1-201ENST00000319854 CIRBPQ14011 172 aaKnown RBP11□□□□□ -0.65
SHROOM1-201ENST00000319854 LINC00482Q8N8I6 264 aa10.99□□□□□ -0.65
SHROOM1-201ENST00000319854 PIK3CD-AS1Q5SR53 167 aa10.99□□□□□ -0.65
SHROOM1-201ENST00000319854 C16orf95Q9H693 158 aa10.98□□□□□ -0.65
SHROOM1-201ENST00000319854 C19orf73Q9NVV2 129 aa10.98□□□□□ -0.65
SHROOM1-201ENST00000319854 A0A096LPF7 62 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 444.3 ms