RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PIK3CD-AS1Q5SR53 167 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 RNF152Q8N8N0 203 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 TMEM243Q9BU79 118 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 FBN2P35556 2912 aa7.59□□□□□ -1.2
COL3A1-202ENST00000317840 K7EQD1 137 aa7.58□□□□□ -1.2
COL3A1-202ENST00000317840 PFN2P35080 140 aa7.58□□□□□ -1.2
COL3A1-202ENST00000317840 LINC00242Q5T6M2 205 aa7.58□□□□□ -1.2
COL3A1-202ENST00000317840 C4orf3Q8WVX3 66 aa7.58□□□□□ -1.2
COL3A1-202ENST00000317840 UBR5O95071 2799 aaPredicted RBP7.58□□□□□ -1.2
COL3A1-202ENST00000317840 TIRAPP58753 221 aa7.58□□□□□ -1.2
COL3A1-202ENST00000317840 MAST4O15021 2626 aa7.57□□□□□ -1.2
COL3A1-202ENST00000317840 RS1O15537 224 aa7.57□□□□□ -1.2
COL3A1-202ENST00000317840 BAALC-AS2P0C853 105 aa7.57□□□□□ -1.2
COL3A1-202ENST00000317840 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.57□□□□□ -1.2
COL3A1-202ENST00000317840 ZFHX3Q15911 3703 aa7.57□□□□□ -1.2
COL3A1-202ENST00000317840 DEFB4AO15263 64 aa7.57□□□□□ -1.2
COL3A1-202ENST00000317840 GAGE2AQ6NT46 116 aa7.57□□□□□ -1.2
COL3A1-202ENST00000317840 A0A096LPF7 62 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 PAX4O43316 350 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 C3orf56Q8N813 242 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 C11orf72Q8NBR9 251 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 SETXQ7Z333 2677 aaKnown RBP7.56□□□□□ -1.2
COL3A1-202ENST00000317840 DAZ2Q13117 558 aaKnown RBP7.56□□□□□ -1.2
COL3A1-202ENST00000317840 ODF3L2Q3SX64 289 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 DAZ4Q86SG3 579 aaKnown RBP7.56□□□□□ -1.2
COL3A1-202ENST00000317840 Q9HAA7 133 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 DAZ3Q9NR90 486 aaKnown RBP7.56□□□□□ -1.2
COL3A1-202ENST00000317840 MXRA5Q9NR99 2828 aa7.56□□□□□ -1.2
COL3A1-202ENST00000317840 COX7A2LO14548 114 aa7.55□□□□□ -1.2
COL3A1-202ENST00000317840 C5orf38Q86SI9 138 aa7.55□□□□□ -1.2
COL3A1-202ENST00000317840 CCDC179H3BU77 68 aa7.55□□□□□ -1.2
COL3A1-202ENST00000317840 TIMM17BO60830 172 aa7.55□□□□□ -1.2
COL3A1-202ENST00000317840 MIR7-3HGQ8N6C7 128 aa7.55□□□□□ -1.2
COL3A1-202ENST00000317840 FAM104AQ969W3 186 aa7.55□□□□□ -1.2
COL3A1-202ENST00000317840 SMIM1B2RUZ4 78 aa7.54□□□□□ -1.2
COL3A1-202ENST00000317840 C1orf158Q8N1D5 194 aa7.54□□□□□ -1.2
COL3A1-202ENST00000317840 CITED1Q99966 193 aa7.54□□□□□ -1.2
COL3A1-202ENST00000317840 SND1-IT1Q9HBX3 110 aa7.54□□□□□ -1.2
COL3A1-202ENST00000317840 LOC100131303A0A0U1RQF7 123 aa7.54□□□□□ -1.2
COL3A1-202ENST00000317840 A0A096LNT2 108 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 TRBV10-1A0A0K0K1A3 114 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 M0QXV9 152 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 C6orf226Q5I0X4 101 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 Q8N2B8 174 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 MGAM2Q2M2H8 2515 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 VPS13CQ709C8 3753 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 RNASE1P07998 156 aaKnown RBP7.53□□□□□ -1.2
COL3A1-202ENST00000317840 BEAN1Q3B7T3 259 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 FAM236AA0A1B0GUQ0 79 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 FAM236BA0A1B0GV22 79 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 HERV-K104P63124 156 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 EDA2RQ9HAV5 297 aa7.53□□□□□ -1.2
COL3A1-202ENST00000317840 CLPSL2Q6UWE3 100 aa7.52□□□□□ -1.2
COL3A1-202ENST00000317840 TRAV13-2A0A0B4J235 113 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 LINC00482Q8N8I6 264 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 CDC42SE2Q9NRR3 84 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 NBEAL2Q6ZNJ1 2754 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 NTM-AS1Q6ZSK4 140 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 TMEM86BQ8N661 226 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 COX7B2Q8TF08 81 aa7.52□□□□□ -1.21
COL3A1-202ENST00000317840 SOSTDC1Q6X4U4 206 aa7.51□□□□□ -1.21
COL3A1-202ENST00000317840 XCL1P47992 114 aa7.51□□□□□ -1.21
COL3A1-202ENST00000317840 CSMD2Q7Z408 3487 aa7.5□□□□□ -1.21
COL3A1-202ENST00000317840 ATP5G1P05496 136 aa7.5□□□□□ -1.21
COL3A1-202ENST00000317840 INAFM2P0DMQ5 153 aa7.5□□□□□ -1.21
COL3A1-202ENST00000317840 SMIM20Q8N5G0 67 aa7.5□□□□□ -1.21
COL3A1-202ENST00000317840 IGLV5-39A0A0G2JS06 123 aa7.5□□□□□ -1.21
COL3A1-202ENST00000317840 IGLV5-45A0A087WSX0 123 aa7.49□□□□□ -1.21
COL3A1-202ENST00000317840 ACYP1P07311 99 aa7.49□□□□□ -1.21
COL3A1-202ENST00000317840 HILS1P60008 231 aa7.49□□□□□ -1.21
COL3A1-202ENST00000317840 TRAV25A0A0B4J276 109 aa7.49□□□□□ -1.21
COL3A1-202ENST00000317840 NHLRC4P0CG21 123 aaPredicted RBP7.49□□□□□ -1.21
COL3A1-202ENST00000317840 DEFB135Q30KP9 77 aa7.48□□□□□ -1.21
COL3A1-202ENST00000317840 C16orf74Q96GX8 76 aa7.48□□□□□ -1.21
COL3A1-202ENST00000317840 DEFB121Q5J5C9 76 aa7.48□□□□□ -1.21
COL3A1-202ENST00000317840 Q6Q795 121 aa7.48□□□□□ -1.21
COL3A1-202ENST00000317840 FAM240AA0A1B0GVK7 77 aa7.47□□□□□ -1.21
COL3A1-202ENST00000317840 LECT2O14960 151 aa7.47□□□□□ -1.21
COL3A1-202ENST00000317840 TRACP01848 142 aa7.47□□□□□ -1.21
COL3A1-202ENST00000317840 CMC4P56277 68 aaPredicted RBP7.47□□□□□ -1.21
COL3A1-202ENST00000317840 C9orf153Q5TBE3 101 aa7.47□□□□□ -1.21
COL3A1-202ENST00000317840 KRTAP1-3Q8IUG1 177 aa7.47□□□□□ -1.21
COL3A1-202ENST00000317840 C14orf132Q9NPU4 83 aa7.47□□□□□ -1.21
COL3A1-202ENST00000317840 IGLV4-60A0A075B6I1 120 aa7.46□□□□□ -1.21
COL3A1-202ENST00000317840 MALP21145 153 aa7.46□□□□□ -1.21
COL3A1-202ENST00000317840 CSDC2Q9Y534 153 aaKnown RBP7.46□□□□□ -1.21
COL3A1-202ENST00000317840 A8MTW9 85 aa7.46□□□□□ -1.22
COL3A1-202ENST00000317840 MRPL23Q16540 153 aaKnown RBP7.46□□□□□ -1.22
COL3A1-202ENST00000317840 LINC00643Q86TS7 51 aa7.46□□□□□ -1.22
COL3A1-202ENST00000317840 CR1P17927 2039 aa7.46□□□□□ -1.22
COL3A1-202ENST00000317840 FSHBP01225 129 aa7.46□□□□□ -1.22
COL3A1-202ENST00000317840 FAM218AQ96MZ4 157 aa7.46□□□□□ -1.22
COL3A1-202ENST00000317840 COL6A5A8TX70 2615 aa7.46□□□□□ -1.22
COL3A1-202ENST00000317840 F5H768 121 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 NOTCH1P46531 2555 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 GYPEP15421 78 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 TRBV6-8A0A0A6YYG3 113 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 IGKV3D-7A0A0C4DH55 119 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 SLPIP03973 132 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 SS18Q15532 418 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms