RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 TRBV10-2A0A0K0K1G8 114 aa9.8□□□□□ -0.84
RFFL-201ENST00000315249 COL4A2P08572 1712 aa9.8□□□□□ -0.84
RFFL-201ENST00000315249 A8MZ25 164 aa9.8□□□□□ -0.84
RFFL-201ENST00000315249 IGKV4-1P06312 121 aa9.8□□□□□ -0.84
RFFL-201ENST00000315249 TSHBP01222 138 aa9.79□□□□□ -0.84
RFFL-201ENST00000315249 IBA57-AS1B1ANH7 110 aa9.79□□□□□ -0.84
RFFL-201ENST00000315249 NHLRC4P0CG21 123 aaPredicted RBP9.79□□□□□ -0.84
RFFL-201ENST00000315249 ZNF22P17026 224 aaPredicted RBP9.79□□□□□ -0.84
RFFL-201ENST00000315249 IGLV9-49A0A0B4J1Y8 123 aa9.78□□□□□ -0.84
RFFL-201ENST00000315249 LINC01620Q4KN68 170 aa9.78□□□□□ -0.84
RFFL-201ENST00000315249 COA6Q5JTJ3 125 aaKnown RBP9.78□□□□□ -0.84
RFFL-201ENST00000315249 C1orf134Q5TEV5 83 aa9.78□□□□□ -0.84
RFFL-201ENST00000315249 MP68P56378 58 aa9.78□□□□□ -0.84
RFFL-201ENST00000315249 TMEM223A0PJW6 202 aa9.78□□□□□ -0.84
RFFL-201ENST00000315249 TRBV27A0A0K0K1C4 114 aa9.78□□□□□ -0.84
RFFL-201ENST00000315249 LINC00474Q9P2X8 69 aa9.77□□□□□ -0.84
RFFL-201ENST00000315249 PLAC8L1A1L4L8 177 aa9.77□□□□□ -0.85
RFFL-201ENST00000315249 SLPIP03973 132 aa9.77□□□□□ -0.85
RFFL-201ENST00000315249 FLNBO75369 2602 aaKnown RBP9.77□□□□□ -0.85
RFFL-201ENST00000315249 HIGD1BQ9P298 99 aa9.76□□□□□ -0.85
RFFL-201ENST00000315249 SPANXDQ9BXN6 97 aa9.76□□□□□ -0.85
RFFL-201ENST00000315249 SPANXB1Q9NS25 103 aaPredicted RBP9.76□□□□□ -0.85
RFFL-201ENST00000315249 TRAV23DV6A0A075B6W5 121 aa9.75□□□□□ -0.85
RFFL-201ENST00000315249 CRIP2P52943 208 aaPredicted RBP9.75□□□□□ -0.85
RFFL-201ENST00000315249 C1orf158Q8N1D5 194 aa9.75□□□□□ -0.85
RFFL-201ENST00000315249 KRTAP24-1Q3LI83 254 aa9.75□□□□□ -0.85
RFFL-201ENST00000315249 A0A0B4J2C4 111 aa9.75□□□□□ -0.85
RFFL-201ENST00000315249 CITED1Q99966 193 aa9.75□□□□□ -0.85
RFFL-201ENST00000315249 UBE2D2P62837 147 aa9.74□□□□□ -0.85
RFFL-201ENST00000315249 NRACQ8N912 160 aa9.74□□□□□ -0.85
RFFL-201ENST00000315249 TRBV6-5A0A0K0K1A5 114 aa9.74□□□□□ -0.85
RFFL-201ENST00000315249 FHL3Q13643 280 aa9.74□□□□□ -0.85
RFFL-201ENST00000315249 C6orf99Q4VX62 202 aa9.74□□□□□ -0.85
RFFL-201ENST00000315249 ZNF706Q9Y5V0 76 aaPredicted RBP9.73□□□□□ -0.85
RFFL-201ENST00000315249 ACYP1P07311 99 aa9.73□□□□□ -0.85
RFFL-201ENST00000315249 MKI67P46013 3256 aaKnown RBP9.73□□□□□ -0.85
RFFL-201ENST00000315249 LINC00308Q8TCZ7 52 aa9.73□□□□□ -0.85
RFFL-201ENST00000315249 WFDC9Q8NEX5 89 aa9.73□□□□□ -0.85
RFFL-201ENST00000315249 CYSRT1A8MQ03 144 aa9.72□□□□□ -0.85
RFFL-201ENST00000315249 BPY2O14599 106 aa9.71□□□□□ -0.85
RFFL-201ENST00000315249 PYGO1Q9Y3Y4 419 aa9.71□□□□□ -0.85
RFFL-201ENST00000315249 FHL2Q14192 279 aa9.71□□□□□ -0.85
RFFL-201ENST00000315249 GAS8-AS1O95177 125 aa9.71□□□□□ -0.85
RFFL-201ENST00000315249 M0R378 163 aa9.71□□□□□ -0.86
RFFL-201ENST00000315249 WFDC2Q14508 124 aa9.71□□□□□ -0.86
RFFL-201ENST00000315249 M0QXV9 152 aa9.71□□□□□ -0.86
RFFL-201ENST00000315249 CDC42SE2Q9NRR3 84 aa9.71□□□□□ -0.86
RFFL-201ENST00000315249 C6orf223Q8N319 242 aa9.7□□□□□ -0.86
RFFL-201ENST00000315249 BPTFQ12830 3046 aa9.7□□□□□ -0.86
RFFL-201ENST00000315249 RNASE8Q8TDE3 154 aaKnown RBP9.7□□□□□ -0.86
RFFL-201ENST00000315249 FSHBP01225 129 aa9.7□□□□□ -0.86
RFFL-201ENST00000315249 WFDC10BQ8IUB3 73 aa9.69□□□□□ -0.86
RFFL-201ENST00000315249 USP17L23D6RBM5 183 aa9.69□□□□□ -0.86
RFFL-201ENST00000315249 C5orf47Q569G3 176 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 PDE6GP18545 87 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 UNQ6190/PRO20217Q6UXQ8 127 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 CASC2Q6XLA1 102 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 C9orf116Q5BN46 136 aaPredicted RBP9.68□□□□□ -0.86
RFFL-201ENST00000315249 SCXQ7RTU7 201 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 CIRBP-AS1Q8TBR5 109 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 C3orf84H3BNL1 204 aa9.68□□□□□ -0.86
RFFL-201ENST00000315249 POLR2KP53803 58 aaKnown RBP9.67□□□□□ -0.86
RFFL-201ENST00000315249 MRPS36P82909 103 aaKnown RBP9.67□□□□□ -0.86
RFFL-201ENST00000315249 MRPS12O15235 138 aaKnown RBP9.67□□□□□ -0.86
RFFL-201ENST00000315249 IGLV4-60A0A075B6I1 120 aa9.67□□□□□ -0.86
RFFL-201ENST00000315249 USP24Q9UPU5 2620 aa9.67□□□□□ -0.86
RFFL-201ENST00000315249 TEN1Q86WV5 123 aa9.66□□□□□ -0.86
RFFL-201ENST00000315249 LINC01556Q5JQF7 62 aa9.66□□□□□ -0.86
RFFL-201ENST00000315249 TCL1BO95988 128 aa9.66□□□□□ -0.86
RFFL-201ENST00000315249 MAPKAPK5-AS1Q8N8E1 139 aa9.66□□□□□ -0.86
RFFL-201ENST00000315249 ZNF580Q9UK33 172 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 LYPD5Q6UWN5 251 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 UPK3BQ9BT76 320 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 PTH2Q96A98 100 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 MDFIQ99750 246 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 SPATA12Q7Z6I5 190 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 COX6A2Q02221 97 aa9.65□□□□□ -0.86
RFFL-201ENST00000315249 RPL28P46779 137 aaKnown RBP9.65□□□□□ -0.87
RFFL-201ENST00000315249 DHRS4-AS1Q9P1J3 65 aa9.65□□□□□ -0.87
RFFL-201ENST00000315249 CCKP06307 115 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 SBSPONQ8IVN8 264 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 CELA1Q9UNI1 258 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 H3BT86 120 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 Q8IZM0 81 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 COX17Q14061 63 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 C1orf137Q5JT78 98 aa9.64□□□□□ -0.87
RFFL-201ENST00000315249 LINC00694P0DN24 101 aa9.63□□□□□ -0.87
RFFL-201ENST00000315249 SEC61GP60059 68 aa9.63□□□□□ -0.87
RFFL-201ENST00000315249 Q8N2B8 174 aa9.63□□□□□ -0.87
RFFL-201ENST00000315249 Q6ZQY7 126 aa9.62□□□□□ -0.87
RFFL-201ENST00000315249 CHCHD7Q9BUK0 85 aa9.62□□□□□ -0.87
RFFL-201ENST00000315249 Q6ZSN1 163 aa9.61□□□□□ -0.87
RFFL-201ENST00000315249 HECTD1Q9ULT8 2610 aa9.61□□□□□ -0.87
RFFL-201ENST00000315249 FAM236AA0A1B0GUQ0 79 aa9.61□□□□□ -0.87
RFFL-201ENST00000315249 FAM236BA0A1B0GV22 79 aa9.61□□□□□ -0.87
RFFL-201ENST00000315249 TAX1BP3O14907 124 aa9.6□□□□□ -0.87
RFFL-201ENST00000315249 TP73-AS1Q9UF72 201 aa9.6□□□□□ -0.87
RFFL-201ENST00000315249 SMIM11BQ8TCY0 68 aa9.6□□□□□ -0.87
RFFL-201ENST00000315249 TRBV30A0A0K0K1B3 111 aa9.6□□□□□ -0.87
RFFL-201ENST00000315249 TRIAP1O43715 76 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms