RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 IGHV3OR16-9A0A0B4J2B5 98 aa7.69□□□□□ -1.18
SCFD1-201ENST00000311943 CNBPP62633 177 aaKnown RBP7.69□□□□□ -1.18
SCFD1-201ENST00000311943 MRPS36P82909 103 aaKnown RBP7.69□□□□□ -1.18
SCFD1-201ENST00000311943 CHAC1Q9BUX1 264 aa7.69□□□□□ -1.18
SCFD1-201ENST00000311943 TMEM141Q96I45 108 aa7.69□□□□□ -1.18
SCFD1-201ENST00000311943 PYGO1Q9Y3Y4 419 aa7.69□□□□□ -1.18
SCFD1-201ENST00000311943 MYCBP2O75592 4640 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 COX7A2LO14548 114 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 Q6ZRU5 148 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 KRTAP3-3Q9BYR6 98 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 KRTAP3-2Q9BYR7 98 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 IGKV2-24A0A0C4DH68 120 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 EPM2AB3EWF7 344 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 MALP21145 153 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 UBE2D1P51668 147 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 ORMDL2Q53FV1 153 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 C10orf25Q5T742 122 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 TOMM6Q96B49 74 aa7.68□□□□□ -1.18
SCFD1-201ENST00000311943 IGHV1-58A0A0C4DH39 117 aa7.67□□□□□ -1.18
SCFD1-201ENST00000311943 MT-ND6P03923 174 aa7.67□□□□□ -1.18
SCFD1-201ENST00000311943 AMELXQ99217 191 aa7.67□□□□□ -1.18
SCFD1-201ENST00000311943 AP5S1Q9NUS5 200 aa7.67□□□□□ -1.18
SCFD1-201ENST00000311943 VPS13BQ7Z7G8 4022 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 A0A096LNI7 61 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 TEX43Q6ZNM6 134 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 LINC01546A6NGU7 62 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 CFAP161Q6P656 301 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 LINC00528Q8N1L1 170 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 SCGB3A1Q96QR1 104 aa7.66□□□□□ -1.18
SCFD1-201ENST00000311943 TRGC2P03986 189 aa7.65□□□□□ -1.18
SCFD1-201ENST00000311943 C2orf82Q6UX34 121 aa7.65□□□□□ -1.18
SCFD1-201ENST00000311943 FA2HQ7L5A8 372 aa7.65□□□□□ -1.18
SCFD1-201ENST00000311943 VCX2Q9H322 139 aa7.65□□□□□ -1.18
SCFD1-201ENST00000311943 FLG2Q5D862 2391 aaPredicted RBP7.65□□□□□ -1.19
SCFD1-201ENST00000311943 A0A087WYN8 130 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 ZNF561-AS1K7EIQ3 104 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 SPAG11BQ08648 103 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 ORAOV1Q8WV07 137 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 SMCO4Q9NRQ5 59 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 IGHV3-64A0A075B6Q5 118 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 LINC00614P0C842 121 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 KRTAP10-4P60372 401 aaPredicted RBP7.64□□□□□ -1.19
SCFD1-201ENST00000311943 SYCNQ0VAF6 134 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 COX19Q49B96 90 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 UNQ6190/PRO20217Q6UXQ8 127 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 CARD19Q96LW7 228 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 CDKN2A-AS1Q9UH64 79 aa7.64□□□□□ -1.19
SCFD1-201ENST00000311943 LRP1Q07954 4544 aaKnown RBP7.63□□□□□ -1.19
SCFD1-201ENST00000311943 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-201ENST00000311943 COLCA2A8K830 154 aa7.63□□□□□ -1.19
SCFD1-201ENST00000311943 KIAA0087Q14695 138 aa7.63□□□□□ -1.19
SCFD1-201ENST00000311943 DPH3Q96FX2 82 aa7.63□□□□□ -1.19
SCFD1-201ENST00000311943 NUPR1O60356 82 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 SMAGPQ0VAQ4 97 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 ERASQ7Z444 233 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 SPACA4Q8TDM5 124 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 CAMK2N2Q96S95 79 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 A0A087WZ39 114 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 K7EMI3 77 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 HNRNPA3P51991 378 aaKnown RBP7.62□□□□□ -1.19
SCFD1-201ENST00000311943 LINC00310P59036 64 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 MAJINQ3KP22 176 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 C9orf116Q5BN46 136 aaPredicted RBP7.62□□□□□ -1.19
SCFD1-201ENST00000311943 Q6ZN92 141 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 FAM19A2Q8N3H0 131 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 TIMM17AQ99595 171 aa7.62□□□□□ -1.19
SCFD1-201ENST00000311943 CIRBPQ14011 172 aaKnown RBP7.61□□□□□ -1.19
SCFD1-201ENST00000311943 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.61□□□□□ -1.19
SCFD1-201ENST00000311943 GAGE2BQ13066 116 aa7.61□□□□□ -1.19
SCFD1-201ENST00000311943 CST9LQ9H4G1 147 aa7.61□□□□□ -1.19
SCFD1-201ENST00000311943 TOMM7Q9P0U1 55 aa7.61□□□□□ -1.19
SCFD1-201ENST00000311943 C6orf48Q9UBA6 75 aa7.61□□□□□ -1.19
SCFD1-201ENST00000311943 NDUFA6P56556 154 aa7.6□□□□□ -1.19
SCFD1-201ENST00000311943 C2orf88Q9BSF0 95 aa7.6□□□□□ -1.19
SCFD1-201ENST00000311943 A0A1W2PNN7 141 aa7.59□□□□□ -1.19
SCFD1-201ENST00000311943 FAM229AH3BQW9 127 aa7.59□□□□□ -1.19
SCFD1-201ENST00000311943 STPG4Q8N801 248 aa7.59□□□□□ -1.19
SCFD1-201ENST00000311943 FAM168BA1KXE4 195 aa7.58□□□□□ -1.2
SCFD1-201ENST00000311943 INAFM2P0DMQ5 153 aa7.58□□□□□ -1.2
SCFD1-201ENST00000311943 PDZD11Q5EBL8 140 aa7.58□□□□□ -1.2
SCFD1-201ENST00000311943 SPINK8P0C7L1 97 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 RPL18AQ02543 176 aaKnown RBP7.57□□□□□ -1.2
SCFD1-201ENST00000311943 Q6ZRP5 223 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 HERC1Q15751 4861 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 APOMO95445 188 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 HBDP02042 147 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 FAM19A3Q7Z5A8 133 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 LINC00469Q8N7U9 141 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 OR10D4PQ8NGN7 298 aa7.57□□□□□ -1.2
SCFD1-201ENST00000311943 SMIM1B2RUZ4 78 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 PTTG1IPP53801 180 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 PMVKQ15126 192 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 KRTAP7-1Q8IUC3 87 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 GEMIN7Q9H840 131 aaKnown RBP7.56□□□□□ -1.2
SCFD1-201ENST00000311943 SERF1AO75920 110 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 GAGE2EQ4V326 116 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 C2orf48Q96LS8 159 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 PLAC8Q9NZF1 115 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 GAGE2DQ9UEU5 116 aa7.56□□□□□ -1.2
SCFD1-201ENST00000311943 BAGE3Q86Y29 109 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms