RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TRAV12-2A0A075B6T6 113 aa8□□□□□ -1.13
LSM3-201ENST00000306024 MED14OSP0DP75 135 aa8□□□□□ -1.13
LSM3-201ENST00000306024 RNASE3P12724 160 aaKnown RBP8□□□□□ -1.13
LSM3-201ENST00000306024 Q8N2B8 174 aa8□□□□□ -1.13
LSM3-201ENST00000306024 TOMM7Q9P0U1 55 aa8□□□□□ -1.13
LSM3-201ENST00000306024 KLK9Q9UKQ9 250 aa8□□□□□ -1.13
LSM3-201ENST00000306024 DEFB131AP59861 70 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 C20orf173Q96LM9 149 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 C14orf132Q9NPU4 83 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 RBMY1BA6NDE4 496 aaKnown RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 RBMY1EA6NEQ0 496 aaKnown RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 SOCS3O14543 225 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 RBMY1DP0C7P1 496 aaKnown RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 RBMY1A1P0DJD3 496 aaKnown RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 RBMY1CP0DJD4 496 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 RBMY1FQ15415 496 aaKnown RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 TRBV27A0A0K0K1C4 114 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 KNCNA6PVL3 124 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 EIF4EBP3O60516 100 aaPredicted RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 CRYGAP11844 174 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 RPS28P62857 69 aaKnown RBP7.99□□□□□ -1.13
LSM3-201ENST00000306024 POM121L12Q8N7R1 296 aa7.99□□□□□ -1.13
LSM3-201ENST00000306024 A0A0J9YX75 114 aa7.98□□□□□ -1.13
LSM3-201ENST00000306024 ZNF575Q86XF7 245 aa7.98□□□□□ -1.13
LSM3-201ENST00000306024 AMELXQ99217 191 aa7.98□□□□□ -1.13
LSM3-201ENST00000306024 A0A087WVE0 104 aa7.98□□□□□ -1.13
LSM3-201ENST00000306024 USP17L23D6RBM5 183 aa7.98□□□□□ -1.13
LSM3-201ENST00000306024 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.97□□□□□ -1.13
LSM3-201ENST00000306024 IGKV2-29A2NJV5 120 aaPredicted RBP7.97□□□□□ -1.13
LSM3-201ENST00000306024 DPH3Q96FX2 82 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 C16orf95Q9H693 158 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 IGHV3OR16-12A0A075B7B8 117 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 IGHV3-38A0A0C4DH36 116 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 IGKV3OR2-268A0A0C4DH90 116 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 MALP21145 153 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 C20orf197Q8N268 126 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 SMCR5Q8TEV8 140 aa7.97□□□□□ -1.13
LSM3-201ENST00000306024 VSIG2Q96IQ7 327 aa7.96□□□□□ -1.13
LSM3-201ENST00000306024 GHRHP01286 108 aa7.96□□□□□ -1.14
LSM3-201ENST00000306024 EDN2P20800 178 aa7.96□□□□□ -1.14
LSM3-201ENST00000306024 PROK1P58294 105 aa7.96□□□□□ -1.14
LSM3-201ENST00000306024 STHQ8IWL8 128 aa7.96□□□□□ -1.14
LSM3-201ENST00000306024 MRAPQ8TCY5 172 aa7.96□□□□□ -1.14
LSM3-201ENST00000306024 NSD1Q96L73 2696 aaPredicted RBP7.96□□□□□ -1.14
LSM3-201ENST00000306024 SPINK13Q1W4C9 94 aa7.95□□□□□ -1.14
LSM3-201ENST00000306024 TRAV23DV6A0A075B6W5 121 aa7.95□□□□□ -1.14
LSM3-201ENST00000306024 S100A7L2Q5SY68 101 aa7.95□□□□□ -1.14
LSM3-201ENST00000306024 OVOL2Q9BRP0 275 aa7.95□□□□□ -1.14
LSM3-201ENST00000306024 LINC00158P58513 81 aa7.95□□□□□ -1.14
LSM3-201ENST00000306024 LINC00308Q8TCZ7 52 aa7.95□□□□□ -1.14
LSM3-201ENST00000306024 ZNF415Q09FC8 603 aa7.94□□□□□ -1.14
LSM3-201ENST00000306024 PFN2P35080 140 aa7.94□□□□□ -1.14
LSM3-201ENST00000306024 M0QY20 66 aa7.94□□□□□ -1.14
LSM3-201ENST00000306024 CDKN2A-AS1Q9UH64 79 aa7.94□□□□□ -1.14
LSM3-201ENST00000306024 PDZD2O15018 2839 aa7.94□□□□□ -1.14
LSM3-201ENST00000306024 IGHV1OR15-1A0A075B7D0 117 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 DEFB121Q5J5C9 76 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 NF1P21359 2839 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 TRBV6-5A0A0K0K1A5 114 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 U3KQE9 123 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 MXRA5Q9NR99 2828 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 FAM236DA0A1B0GTK5 79 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 FAM236CP0DP71 79 aa7.93□□□□□ -1.14
LSM3-201ENST00000306024 RBM3P98179 157 aaKnown RBP7.93□□□□□ -1.14
LSM3-201ENST00000306024 TRAV13-2A0A0B4J235 113 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 PAX4O43316 350 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 KLK9Q2XQG4 91 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 CELSR1Q9NYQ6 3014 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 RPL35AP18077 110 aaKnown RBP7.92□□□□□ -1.14
LSM3-201ENST00000306024 DEFB114Q30KQ6 69 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 APRG1Q8IVJ8 170 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 DCANP1Q8TF63 244 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 CSMD2Q7Z408 3487 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 COL6A5A8TX70 2615 aa7.92□□□□□ -1.14
LSM3-201ENST00000306024 PYGO1Q9Y3Y4 419 aa7.91□□□□□ -1.14
LSM3-201ENST00000306024 CMC4P56277 68 aaPredicted RBP7.91□□□□□ -1.14
LSM3-201ENST00000306024 A0A0U1RQV1 116 aa7.91□□□□□ -1.14
LSM3-201ENST00000306024 LECT2O14960 151 aa7.91□□□□□ -1.14
LSM3-201ENST00000306024 BRK1Q8WUW1 75 aa7.91□□□□□ -1.14
LSM3-201ENST00000306024 IGHV3-16A0A0C4DH30 117 aa7.9□□□□□ -1.14
LSM3-201ENST00000306024 MRPS36P82909 103 aaKnown RBP7.9□□□□□ -1.14
LSM3-201ENST00000306024 WIPF1O43516 503 aa7.9□□□□□ -1.14
LSM3-201ENST00000306024 RPL36AP83881 106 aaKnown RBP7.9□□□□□ -1.14
LSM3-201ENST00000306024 RPL36ALQ969Q0 106 aaKnown RBP7.9□□□□□ -1.14
LSM3-201ENST00000306024 K7EQG2 157 aa7.9□□□□□ -1.15
LSM3-201ENST00000306024 C5orf38Q86SI9 138 aa7.9□□□□□ -1.15
LSM3-201ENST00000306024 UBL5Q9BZL1 73 aa7.9□□□□□ -1.15
LSM3-201ENST00000306024 KIF25-AS1Q9Y6Z4 181 aa7.9□□□□□ -1.15
LSM3-201ENST00000306024 UBE2L6O14933 153 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 LINC00315P59091 139 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 PIK3CD-AS1Q5SR53 167 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 C9orf66Q5T8R8 295 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 CSMD1Q96PZ7 3565 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 NDUFC2O95298 119 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 FAM19A4Q96LR4 140 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 XCL2Q9UBD3 114 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 NCR3O14931 201 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 TIMM17BO60830 172 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 Q6JHZ5 121 aa7.89□□□□□ -1.15
LSM3-201ENST00000306024 NDUFA1O15239 70 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms