RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PKDREJQ9NTG1 2253 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 CCL18P55774 89 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 MAPK1IP1LQ8NDC0 245 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 EDN2P20800 178 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 Q6JHZ5 121 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 ARHGAP32A7KAX9 2087 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 CCDC140Q96MF4 163 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 PRLHP81277 87 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 KIF25-AS1Q9Y6Z4 181 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 C6orf99Q4VX62 202 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 CEP192Q8TEP8 1941 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 B4DSR2 109 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 AMELXQ99217 191 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 FREM1Q5H8C1 2179 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 SSBP3-AS1Q7Z2R9 100 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 IGLV4-69A0A075B6H9 119 aa4.75□□□□□ -1.65
VPS35-201ENST00000299138 PRAC2D3DTV9 90 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 DEFB4AO15263 64 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 LINC00308Q8TCZ7 52 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 TRBV10-3A0A0K0K1G6 114 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 KIR2DL5BQ8NHK3 375 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 UBE2D4Q9Y2X8 147 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 ZFHX2Q9C0A1 2572 aaPredicted RBP4.74□□□□□ -1.65
VPS35-201ENST00000299138 IGLV9-49A0A0B4J1Y8 123 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 M0QY20 66 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 C16orf74Q96GX8 76 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 SPTA1P02549 2419 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 IGKV2-28A0A075B6P5 120 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 IGKV2D-28P01615 120 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 BPESC1Q9GZL8 116 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 CHD9Q3L8U1 2897 aa4.74□□□□□ -1.65
VPS35-201ENST00000299138 C11orf21Q9P2W6 132 aa4.73□□□□□ -1.65
VPS35-201ENST00000299138 IGLV5-45A0A087WSX0 123 aa4.73□□□□□ -1.65
VPS35-201ENST00000299138 A0A1B0GU69 56 aa4.73□□□□□ -1.65
VPS35-201ENST00000299138 LINC01547P58512 204 aaPredicted RBP4.73□□□□□ -1.65
VPS35-201ENST00000299138 MALRD1Q5VYJ5 2156 aa4.73□□□□□ -1.65
VPS35-201ENST00000299138 LIMD2Q9BT23 127 aa4.73□□□□□ -1.65
VPS35-201ENST00000299138 PLCE1Q9P212 2302 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 SMCPP49901 116 aaPredicted RBP4.72□□□□□ -1.65
VPS35-201ENST00000299138 C11orf71Q6IPW1 123 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 ANKHD1Q8IWZ3 2542 aaKnown RBP4.72□□□□□ -1.65
VPS35-201ENST00000299138 IGLV4-3A0A075B6K6 122 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 TRAV10A0A0B4J240 114 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 H0Y9P7 68 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 IL17DQ8TAD2 202 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 TANC2Q9HCD6 1990 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 GVINP1Q7Z2Y8 2422 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 IGLV8-61A0A075B6I0 122 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 LINC01356Q8N9X3 169 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 MYO15AQ9UKN7 3530 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 A6NDX4 124 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 LINC01561Q8N1V8 128 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 DEFB116Q30KQ4 102 aa4.72□□□□□ -1.65
VPS35-201ENST00000299138 OTOGLQ3ZCN5 2332 aa4.71□□□□□ -1.65
VPS35-201ENST00000299138 SPART-AS1P0CW21 52 aa4.71□□□□□ -1.65
VPS35-201ENST00000299138 LINC00315P59091 139 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 CHD7Q9P2D1 2997 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 K7EQG2 157 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 DEFB1P60022 68 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 ATP11AUNQ6ZP68 121 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 SMIM11BQ8TCY0 68 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 SPTBN2O15020 2390 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 PLAC8L1A1L4L8 177 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 Q8N3U1 123 aa4.71□□□□□ -1.66
VPS35-201ENST00000299138 CDKN2A-AS1Q9UH64 79 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 Q8NA96 180 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 IGLV1-40P01703 118 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 SLURP1P55000 103 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 WNK2Q9Y3S1 2297 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 TSHBP01222 138 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 HCFC1P51610 2035 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 IGHV6-1A0A0B4J1U7 121 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 A8MTW9 85 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 HILS1P60008 231 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 RPL37AP8A6NKH3 93 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 HCG22E2RYF7 251 aa4.7□□□□□ -1.66
VPS35-201ENST00000299138 RPL28P46779 137 aaKnown RBP4.69□□□□□ -1.66
VPS35-201ENST00000299138 WDFY4Q6ZS81 3184 aa4.69□□□□□ -1.66
VPS35-201ENST00000299138 IGLV5-39A0A0G2JS06 123 aa4.69□□□□□ -1.66
VPS35-201ENST00000299138 IBA57-AS1B1ANH7 110 aa4.69□□□□□ -1.66
VPS35-201ENST00000299138 REG3AQ06141 175 aa4.69□□□□□ -1.66
VPS35-201ENST00000299138 RAI1Q7Z5J4 1906 aaPredicted RBP4.68□□□□□ -1.66
VPS35-201ENST00000299138 CCL24O00175 119 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 ABCA4P78363 2273 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 LOC100131303A0A0U1RQF7 123 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 ACACAQ13085 2346 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 MSMBP08118 114 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 LMO4P61968 165 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 ZNF843Q8N446 348 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 CHCHD10Q8WYQ3 142 aaPredicted RBP4.68□□□□□ -1.66
VPS35-201ENST00000299138 MUC6Q6W4X9 2439 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 COL6A6A6NMZ7 2263 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 NAV3Q8IVL0 2385 aa4.68□□□□□ -1.66
VPS35-201ENST00000299138 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.67□□□□□ -1.66
VPS35-201ENST00000299138 PRM2P04554 102 aa4.67□□□□□ -1.66
VPS35-201ENST00000299138 TRIOO75962 3097 aa4.67□□□□□ -1.66
VPS35-201ENST00000299138 CD164Q04900 197 aa4.67□□□□□ -1.66
VPS35-201ENST00000299138 Q6ZS46 218 aa4.66□□□□□ -1.66
VPS35-201ENST00000299138 NTM-AS1Q6ZSK4 140 aa4.66□□□□□ -1.66
VPS35-201ENST00000299138 CACNA1BQ00975 2339 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms