RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 DEFB136Q30KP8 78 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 DUX3Q96PT4 197 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 TRAV8-3A0A0A6YYJ7 113 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 IGLV5-39A0A0G2JS06 123 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 COX7A2LO14548 114 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 MEIG1Q5JSS6 88 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 FAM222AQ5U5X8 452 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 LINC00643Q86TS7 51 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 LINC00482Q8N8I6 264 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 UBE2E2Q96LR5 201 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 LINC01587Q99440 93 aa7.45□□□□□ -1.22
UPF3B-201ENST00000276201 NACAE9PAV3 2078 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 CXCL5P42830 114 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 CIRBPQ14011 172 aaKnown RBP7.44□□□□□ -1.22
UPF3B-201ENST00000276201 WFDC9Q8NEX5 89 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 TNFRSF18Q9Y5U5 241 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 CCL24O00175 119 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 DEFB104AQ8WTQ1 72 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 CLEC2BQ92478 149 aa7.44□□□□□ -1.22
UPF3B-201ENST00000276201 IGKV3-7A0A075B6H7 116 aa7.43□□□□□ -1.22
UPF3B-201ENST00000276201 DAND5Q8N907 189 aa7.43□□□□□ -1.22
UPF3B-201ENST00000276201 CFAP161Q6P656 301 aa7.42□□□□□ -1.22
UPF3B-201ENST00000276201 TRAV12-2A0A075B6T6 113 aa7.42□□□□□ -1.22
UPF3B-201ENST00000276201 BEAN1Q3B7T3 259 aa7.42□□□□□ -1.22
UPF3B-201ENST00000276201 OXLD1Q5BKU9 147 aa7.42□□□□□ -1.22
UPF3B-201ENST00000276201 LINC00308Q8TCZ7 52 aa7.42□□□□□ -1.22
UPF3B-201ENST00000276201 PEMTQ9UBM1 199 aa7.42□□□□□ -1.22
UPF3B-201ENST00000276201 SPINK13Q1W4C9 94 aa7.41□□□□□ -1.22
UPF3B-201ENST00000276201 IGHV3-53P01767 116 aa7.41□□□□□ -1.22
UPF3B-201ENST00000276201 HERVK_113P63121 156 aa7.41□□□□□ -1.22
UPF3B-201ENST00000276201 KPRPQ5T749 579 aaPredicted RBP7.41□□□□□ -1.22
UPF3B-201ENST00000276201 C5orf38Q86SI9 138 aa7.41□□□□□ -1.22
UPF3B-201ENST00000276201 EDN2P20800 178 aa7.4□□□□□ -1.22
UPF3B-201ENST00000276201 ZNF415Q09FC8 603 aa7.4□□□□□ -1.22
UPF3B-201ENST00000276201 SMIM20Q8N5G0 67 aa7.4□□□□□ -1.22
UPF3B-201ENST00000276201 HERV-K104P63124 156 aa7.4□□□□□ -1.23
UPF3B-201ENST00000276201 CSDC2Q9Y534 153 aaKnown RBP7.4□□□□□ -1.23
UPF3B-201ENST00000276201 UQCRQO14949 82 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 INAFM2P0DMQ5 153 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 C3orf22Q8N5N4 141 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 RS1O15537 224 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 OVOL2Q9BRP0 275 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 CHCHD5Q9BSY4 110 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 CDKN2A-AS1Q9UH64 79 aa7.39□□□□□ -1.23
UPF3B-201ENST00000276201 RBMY1A1P0DJD3 496 aaKnown RBP7.38□□□□□ -1.23
UPF3B-201ENST00000276201 RBMY1CP0DJD4 496 aa7.38□□□□□ -1.23
UPF3B-201ENST00000276201 SLURP1P55000 103 aa7.38□□□□□ -1.23
UPF3B-201ENST00000276201 RBMY1FQ15415 496 aaKnown RBP7.38□□□□□ -1.23
UPF3B-201ENST00000276201 LINC00526Q96FQ7 95 aa7.38□□□□□ -1.23
UPF3B-201ENST00000276201 CEMP1Q6PRD7 247 aaPredicted RBP7.38□□□□□ -1.23
UPF3B-201ENST00000276201 FAM236AA0A1B0GUQ0 79 aa7.37□□□□□ -1.23
UPF3B-201ENST00000276201 FAM236BA0A1B0GV22 79 aa7.37□□□□□ -1.23
UPF3B-201ENST00000276201 PRB2P02812 416 aaPredicted RBP7.37□□□□□ -1.23
UPF3B-201ENST00000276201 HIST1H4AP62805 103 aaKnown RBP7.37□□□□□ -1.23
UPF3B-201ENST00000276201 ZNF625Q96I27 306 aaPredicted RBP7.37□□□□□ -1.23
UPF3B-201ENST00000276201 HOXD3P31249 432 aaPredicted RBP7.37□□□□□ -1.23
UPF3B-201ENST00000276201 C22orf24Q9Y442 160 aa7.37□□□□□ -1.23
UPF3B-201ENST00000276201 A0A1B0GX51 115 aa7.36□□□□□ -1.23
UPF3B-201ENST00000276201 A8MZ25 164 aa7.36□□□□□ -1.23
UPF3B-201ENST00000276201 IGKV3-20P01619 116 aa7.36□□□□□ -1.23
UPF3B-201ENST00000276201 SMCR5Q8TEV8 140 aa7.36□□□□□ -1.23
UPF3B-201ENST00000276201 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.35□□□□□ -1.23
UPF3B-201ENST00000276201 IGKV2-29A2NJV5 120 aaPredicted RBP7.35□□□□□ -1.23
UPF3B-201ENST00000276201 WIPF1O43516 503 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 KRTAP10-11P60412 298 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 Q6ZSN1 163 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 C11orf72Q8NBR9 251 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 Q9H8V8 135 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 DNAH3Q8TD57 4116 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 IGHV3OR16-12A0A075B7B8 117 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 BAALC-AS2P0C853 105 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 RPL28P46779 137 aaKnown RBP7.35□□□□□ -1.23
UPF3B-201ENST00000276201 EGFEM1PQ0D2K5 195 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 DAZ2Q13117 558 aaKnown RBP7.35□□□□□ -1.23
UPF3B-201ENST00000276201 LINC00242Q5T6M2 205 aa7.35□□□□□ -1.23
UPF3B-201ENST00000276201 DAZ4Q86SG3 579 aaKnown RBP7.35□□□□□ -1.23
UPF3B-201ENST00000276201 DAZ3Q9NR90 486 aaKnown RBP7.35□□□□□ -1.23
UPF3B-201ENST00000276201 SMIM1B2RUZ4 78 aa7.34□□□□□ -1.23
UPF3B-201ENST00000276201 RNASE13Q5GAN3 156 aaKnown RBP7.34□□□□□ -1.23
UPF3B-201ENST00000276201 C9orf66Q5T8R8 295 aa7.34□□□□□ -1.23
UPF3B-201ENST00000276201 SOSTDC1Q6X4U4 206 aa7.34□□□□□ -1.23
UPF3B-201ENST00000276201 TRAV13-2A0A0B4J235 113 aa7.34□□□□□ -1.23
UPF3B-201ENST00000276201 NPC2P61916 151 aa7.34□□□□□ -1.23
UPF3B-201ENST00000276201 F5H768 121 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 COX7CP15954 63 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 SYNJ2BPP57105 145 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 COX6A2Q02221 97 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 C9orf153Q5TBE3 101 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 IGHV3-73A0A0B4J1V6 119 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 TRBV10-1A0A0K0K1A3 114 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 ATOX1O00244 68 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 CRYGAP11844 174 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 RPS28P62857 69 aaKnown RBP7.33□□□□□ -1.24
UPF3B-201ENST00000276201 OBSCN-AS1Q96MR7 158 aa7.33□□□□□ -1.24
UPF3B-201ENST00000276201 RBMY1BA6NDE4 496 aaKnown RBP7.32□□□□□ -1.24
UPF3B-201ENST00000276201 RBMY1EA6NEQ0 496 aaKnown RBP7.32□□□□□ -1.24
UPF3B-201ENST00000276201 RBMY1DP0C7P1 496 aaKnown RBP7.32□□□□□ -1.24
UPF3B-201ENST00000276201 DGAT2L7PQ6IED9 249 aa7.32□□□□□ -1.24
UPF3B-201ENST00000276201 IL17DQ8TAD2 202 aa7.32□□□□□ -1.24
UPF3B-201ENST00000276201 MALP21145 153 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms