RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 MT-ATP8P03928 68 aa11.69□□□□□ -0.54
HOXD3-201ENST00000249440 GIG44P09565 113 aaPredicted RBP11.69□□□□□ -0.54
HOXD3-201ENST00000249440 RPL13AP40429 203 aaKnown RBP11.69□□□□□ -0.54
HOXD3-201ENST00000249440 COPS9Q8WXC6 57 aa11.69□□□□□ -0.54
HOXD3-201ENST00000249440 FAM110AQ9BQ89 295 aa11.69□□□□□ -0.54
HOXD3-201ENST00000249440 SETD2Q9BYW2 2564 aaPredicted RBP11.69□□□□□ -0.54
HOXD3-201ENST00000249440 UBE2L6O14933 153 aa11.69□□□□□ -0.54
HOXD3-201ENST00000249440 C16orf95Q9H693 158 aa11.69□□□□□ -0.54
HOXD3-201ENST00000249440 TRGV2A0A075B6R0 118 aa11.68□□□□□ -0.54
HOXD3-201ENST00000249440 LINC00308Q8TCZ7 52 aa11.68□□□□□ -0.54
HOXD3-201ENST00000249440 NSD1Q96L73 2696 aaPredicted RBP11.68□□□□□ -0.54
HOXD3-201ENST00000249440 JMJD1CQ15652 2540 aa11.67□□□□□ -0.54
HOXD3-201ENST00000249440 RNASE1P07998 156 aaKnown RBP11.67□□□□□ -0.54
HOXD3-201ENST00000249440 ZNF625Q96I27 306 aaPredicted RBP11.67□□□□□ -0.54
HOXD3-201ENST00000249440 TMEM243Q9BU79 118 aa11.67□□□□□ -0.54
HOXD3-201ENST00000249440 PLAC8L1A1L4L8 177 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 GAGE7O76087 117 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 IGLV1-51P01701 117 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 GAGE12FP0CL80 117 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 GAGE12GP0CL81 117 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 GAGE12IP0CL82 117 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 C2orf82Q6UX34 121 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 TRBV6-4A0A1B0GX49 114 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 H7C423 109 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 LST1O00453 97 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 PRIMA1Q86XR5 153 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 F8P00451 2351 aa11.66□□□□□ -0.54
HOXD3-201ENST00000249440 H3BT86 120 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 RPL35AP18077 110 aaKnown RBP11.65□□□□□ -0.54
HOXD3-201ENST00000249440 WFDC10AQ9H1F0 79 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 C2CD3Q4AC94 2353 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 TEX49A0A1B0GTD5 131 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 F5H768 121 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 HERV-K104P63124 156 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 MEIG1Q5JSS6 88 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 CLEC2BQ92478 149 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 OVOL2Q9BRP0 275 aa11.65□□□□□ -0.54
HOXD3-201ENST00000249440 A0A0U1RRA0 63 aa11.64□□□□□ -0.55
HOXD3-201ENST00000249440 CKS1BP61024 79 aa11.64□□□□□ -0.55
HOXD3-201ENST00000249440 UBE2WQ96B02 151 aa11.64□□□□□ -0.55
HOXD3-201ENST00000249440 C19orf73Q9NVV2 129 aa11.64□□□□□ -0.55
HOXD3-201ENST00000249440 FN1P02751 2386 aaKnown RBP11.64□□□□□ -0.55
HOXD3-201ENST00000249440 CSNK1G2-AS1Q8NCQ2 148 aa11.63□□□□□ -0.55
HOXD3-201ENST00000249440 HIVEP2P31629 2446 aa11.63□□□□□ -0.55
HOXD3-201ENST00000249440 MAST4O15021 2626 aa11.63□□□□□ -0.55
HOXD3-201ENST00000249440 TRGV4A0A0C4DH28 118 aa11.63□□□□□ -0.55
HOXD3-201ENST00000249440 LOC100131303A0A0U1RQF7 123 aa11.61□□□□□ -0.55
HOXD3-201ENST00000249440 SOSTDC1Q6X4U4 206 aa11.6□□□□□ -0.55
HOXD3-201ENST00000249440 LY6G6DO95868 133 aa11.6□□□□□ -0.55
HOXD3-201ENST00000249440 TRAV8-4A0A0B4J246 113 aa11.59□□□□□ -0.55
HOXD3-201ENST00000249440 PPDPFQ9H3Y8 114 aa11.59□□□□□ -0.55
HOXD3-201ENST00000249440 COX7A2LO14548 114 aa11.58□□□□□ -0.56
HOXD3-201ENST00000249440 SHISA2Q6UWI4 295 aa11.58□□□□□ -0.56
HOXD3-201ENST00000249440 TRBV6-8A0A0A6YYG3 113 aa11.57□□□□□ -0.56
HOXD3-201ENST00000249440 GAGE6Q13070 117 aa11.57□□□□□ -0.56
HOXD3-201ENST00000249440 FHL2Q14192 279 aa11.57□□□□□ -0.56
HOXD3-201ENST00000249440 SNCGO76070 127 aa11.57□□□□□ -0.56
HOXD3-201ENST00000249440 COX7B2Q8TF08 81 aa11.56□□□□□ -0.56
HOXD3-201ENST00000249440 HILS1P60008 231 aa11.55□□□□□ -0.56
HOXD3-201ENST00000249440 CITED1Q99966 193 aa11.55□□□□□ -0.56
HOXD3-201ENST00000249440 CHCHD5Q9BSY4 110 aa11.54□□□□□ -0.56
HOXD3-201ENST00000249440 IGKV3OR2-268A0A0C4DH90 116 aa11.54□□□□□ -0.56
HOXD3-201ENST00000249440 DEFB121Q5J5C9 76 aa11.54□□□□□ -0.56
HOXD3-201ENST00000249440 IGLV4-60A0A075B6I1 120 aa11.53□□□□□ -0.56
HOXD3-201ENST00000249440 PF4P02776 101 aa11.53□□□□□ -0.56
HOXD3-201ENST00000249440 TOMM7Q9P0U1 55 aa11.53□□□□□ -0.56
HOXD3-201ENST00000249440 INAFM1C9JVW0 142 aa11.53□□□□□ -0.56
HOXD3-201ENST00000249440 TRAV13-2A0A0B4J235 113 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 IGHV3OR16-9A0A0B4J2B5 98 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 FAM240AA0A1B0GVK7 77 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 GAGE2BQ13066 116 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 GAGE2EQ4V326 116 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 KIR2DL5BQ8NHK3 375 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 GAGE2DQ9UEU5 116 aa11.52□□□□□ -0.57
HOXD3-201ENST00000249440 TRACP01848 142 aa11.51□□□□□ -0.57
HOXD3-201ENST00000249440 DEFB130BP0DP73 79 aa11.51□□□□□ -0.57
HOXD3-201ENST00000249440 DEFB130AP0DP74 79 aa11.51□□□□□ -0.57
HOXD3-201ENST00000249440 MIR7-3HGQ8N6C7 128 aa11.51□□□□□ -0.57
HOXD3-201ENST00000249440 FAM222AQ5U5X8 452 aa11.5□□□□□ -0.57
HOXD3-201ENST00000249440 A0A087WZ39 114 aa11.49□□□□□ -0.57
HOXD3-201ENST00000249440 CRLF1O75462 422 aa11.49□□□□□ -0.57
HOXD3-201ENST00000249440 C15orf53Q8NAA6 179 aa11.49□□□□□ -0.57
HOXD3-201ENST00000249440 TENM1Q9UKZ4 2725 aa11.49□□□□□ -0.57
HOXD3-201ENST00000249440 CRPP02741 224 aa11.48□□□□□ -0.57
HOXD3-201ENST00000249440 SND1-IT1Q9HBX3 110 aa11.48□□□□□ -0.57
HOXD3-201ENST00000249440 LINC00158P58513 81 aa11.48□□□□□ -0.57
HOXD3-201ENST00000249440 MRPL23Q16540 153 aaKnown RBP11.48□□□□□ -0.57
HOXD3-201ENST00000249440 Q6Q795 121 aa11.48□□□□□ -0.57
HOXD3-201ENST00000249440 ANAPC13Q9BS18 74 aa11.48□□□□□ -0.57
HOXD3-201ENST00000249440 RPL28P46779 137 aaKnown RBP11.47□□□□□ -0.57
HOXD3-201ENST00000249440 LINC00612Q8N6U2 182 aa11.47□□□□□ -0.57
HOXD3-201ENST00000249440 IBA57-AS1B1ANH7 110 aa11.47□□□□□ -0.57
HOXD3-201ENST00000249440 LINC00959A0A1B0GUT2 108 aa11.46□□□□□ -0.57
HOXD3-201ENST00000249440 GYPEP15421 78 aa11.46□□□□□ -0.58
HOXD3-201ENST00000249440 C5orf38Q86SI9 138 aa11.46□□□□□ -0.58
HOXD3-201ENST00000249440 LINC00337Q8N6G1 96 aa11.45□□□□□ -0.58
HOXD3-201ENST00000249440 LINC00482Q8N8I6 264 aa11.45□□□□□ -0.58
HOXD3-201ENST00000249440 IGKV2-28A0A075B6P5 120 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 IGKV2D-28P01615 120 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 TRAV26-1A0A087WT03 109 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms