RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 U3KQK5 164 aa13.4□□□□□ -0.26
CLIP2-201ENST00000223398 H3BT86 120 aa13.4□□□□□ -0.26
CLIP2-201ENST00000223398 SPANXB1Q9NS25 103 aaPredicted RBP13.4□□□□□ -0.26
CLIP2-201ENST00000223398 FASNP49327 2511 aaKnown RBP13.39□□□□□ -0.27
CLIP2-201ENST00000223398 UBE2D3P61077 147 aa13.39□□□□□ -0.27
CLIP2-201ENST00000223398 UBE2D2P62837 147 aa13.39□□□□□ -0.27
CLIP2-201ENST00000223398 SPINK6Q6UWN8 80 aa13.39□□□□□ -0.27
CLIP2-201ENST00000223398 PYGO1Q9Y3Y4 419 aa13.39□□□□□ -0.27
CLIP2-201ENST00000223398 TRAV23DV6A0A075B6W5 121 aa13.38□□□□□ -0.27
CLIP2-201ENST00000223398 BPY2O14599 106 aa13.38□□□□□ -0.27
CLIP2-201ENST00000223398 FAM236AA0A1B0GUQ0 79 aa13.38□□□□□ -0.27
CLIP2-201ENST00000223398 FAM236BA0A1B0GV22 79 aa13.38□□□□□ -0.27
CLIP2-201ENST00000223398 SCXQ7RTU7 201 aa13.38□□□□□ -0.27
CLIP2-201ENST00000223398 LOC107984640A0A0U1RRK4 108 aa13.38□□□□□ -0.27
CLIP2-201ENST00000223398 C1orf158Q8N1D5 194 aa13.37□□□□□ -0.27
CLIP2-201ENST00000223398 USP9YO00507 2555 aaPredicted RBP13.36□□□□□ -0.27
CLIP2-201ENST00000223398 EXPH5Q8NEV8 1989 aa13.35□□□□□ -0.27
CLIP2-201ENST00000223398 PDE6GP18545 87 aa13.35□□□□□ -0.27
CLIP2-201ENST00000223398 POLR2KP53803 58 aaKnown RBP13.35□□□□□ -0.27
CLIP2-201ENST00000223398 CRIP2P52943 208 aaPredicted RBP13.34□□□□□ -0.27
CLIP2-201ENST00000223398 G3V4G9 280 aa13.33□□□□□ -0.28
CLIP2-201ENST00000223398 IGLV9-49A0A0B4J1Y8 123 aa13.33□□□□□ -0.28
CLIP2-201ENST00000223398 MRPS12O15235 138 aaKnown RBP13.33□□□□□ -0.28
CLIP2-201ENST00000223398 PLAC8L1A1L4L8 177 aa13.32□□□□□ -0.28
CLIP2-201ENST00000223398 CYSRT1A8MQ03 144 aa13.32□□□□□ -0.28
CLIP2-201ENST00000223398 ATG2AQ2TAZ0 1938 aa13.32□□□□□ -0.28
CLIP2-201ENST00000223398 CDC42SE2Q9NRR3 84 aa13.32□□□□□ -0.28
CLIP2-201ENST00000223398 M0R378 163 aa13.31□□□□□ -0.28
CLIP2-201ENST00000223398 C3orf84H3BNL1 204 aa13.31□□□□□ -0.28
CLIP2-201ENST00000223398 TRIAP1O43715 76 aa13.3□□□□□ -0.28
CLIP2-201ENST00000223398 TEX49A0A1B0GTD5 131 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 B5MCH6 92 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 ATOX1O00244 68 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 CCKP06307 115 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 TMEM258P61165 79 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 MRPS36P82909 103 aaKnown RBP13.29□□□□□ -0.28
CLIP2-201ENST00000223398 UNQ6190/PRO20217Q6UXQ8 127 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 Q6ZQY7 126 aa13.29□□□□□ -0.28
CLIP2-201ENST00000223398 ADAMTS20P59510 1910 aa13.28□□□□□ -0.28
CLIP2-201ENST00000223398 UPK3BQ9BT76 320 aa13.28□□□□□ -0.28
CLIP2-201ENST00000223398 WFDC10BQ8IUB3 73 aa13.28□□□□□ -0.28
CLIP2-201ENST00000223398 FHL2Q14192 279 aa13.27□□□□□ -0.28
CLIP2-201ENST00000223398 C9orf116Q5BN46 136 aaPredicted RBP13.27□□□□□ -0.28
CLIP2-201ENST00000223398 IGLV5-52A0A0A0MRZ9 124 aa13.26□□□□□ -0.29
CLIP2-201ENST00000223398 IGLV4-60A0A075B6I1 120 aa13.26□□□□□ -0.29
CLIP2-201ENST00000223398 CPAMD8Q8IZJ3 1885 aa13.26□□□□□ -0.29
CLIP2-201ENST00000223398 ZNF706Q9Y5V0 76 aaPredicted RBP13.26□□□□□ -0.29
CLIP2-201ENST00000223398 C6orf223Q8N319 242 aa13.25□□□□□ -0.29
CLIP2-201ENST00000223398 LINC00474Q9P2X8 69 aa13.25□□□□□ -0.29
CLIP2-201ENST00000223398 RNASE8Q8TDE3 154 aaKnown RBP13.24□□□□□ -0.29
CLIP2-201ENST00000223398 LINC00694P0DN24 101 aa13.24□□□□□ -0.29
CLIP2-201ENST00000223398 M0QXV9 152 aa13.23□□□□□ -0.29
CLIP2-201ENST00000223398 SDIM1Q6ZPB5 146 aa13.23□□□□□ -0.29
CLIP2-201ENST00000223398 CASC2Q6XLA1 102 aa13.23□□□□□ -0.29
CLIP2-201ENST00000223398 POM121L12Q8N7R1 296 aa13.23□□□□□ -0.29
CLIP2-201ENST00000223398 Q8IZM0 81 aa13.23□□□□□ -0.29
CLIP2-201ENST00000223398 DHRS4-AS1Q9P1J3 65 aa13.23□□□□□ -0.29
CLIP2-201ENST00000223398 LINC00242Q5T6M2 205 aa13.22□□□□□ -0.29
CLIP2-201ENST00000223398 MTORP42345 2549 aa13.22□□□□□ -0.29
CLIP2-201ENST00000223398 USP17L23D6RBM5 183 aa13.22□□□□□ -0.29
CLIP2-201ENST00000223398 ZNF73O43830 326 aaPredicted RBP13.21□□□□□ -0.29
CLIP2-201ENST00000223398 SMIM11BQ8TCY0 68 aa13.21□□□□□ -0.29
CLIP2-201ENST00000223398 POLQO75417 2590 aa13.2□□□□□ -0.3
CLIP2-201ENST00000223398 Q6ZSN1 163 aa13.2□□□□□ -0.3
CLIP2-201ENST00000223398 CNFNQ9BYD5 112 aa13.2□□□□□ -0.3
CLIP2-201ENST00000223398 ENHOQ6UWT2 76 aa13.19□□□□□ -0.3
CLIP2-201ENST00000223398 C1orf134Q5TEV5 83 aa13.19□□□□□ -0.3
CLIP2-201ENST00000223398 COX6A2Q02221 97 aa13.19□□□□□ -0.3
CLIP2-201ENST00000223398 CHCHD7Q9BUK0 85 aa13.18□□□□□ -0.3
CLIP2-201ENST00000223398 SS18L2Q9UHA2 77 aa13.18□□□□□ -0.3
CLIP2-201ENST00000223398 ZNF580Q9UK33 172 aa13.18□□□□□ -0.3
CLIP2-201ENST00000223398 TIMM17BO60830 172 aa13.18□□□□□ -0.3
CLIP2-201ENST00000223398 LINC00643Q86TS7 51 aa13.18□□□□□ -0.3
CLIP2-201ENST00000223398 IGIPA6NJ69 53 aa13.18□□□□□ -0.3
CLIP2-201ENST00000223398 COX17Q14061 63 aa13.17□□□□□ -0.3
CLIP2-201ENST00000223398 TRBV30A0A0K0K1B3 111 aa13.17□□□□□ -0.3
CLIP2-201ENST00000223398 YPEL4Q96NS1 127 aa13.17□□□□□ -0.3
CLIP2-201ENST00000223398 SEC61GP60059 68 aa13.16□□□□□ -0.3
CLIP2-201ENST00000223398 LYPD5Q6UWN5 251 aa13.16□□□□□ -0.3
CLIP2-201ENST00000223398 FHL3Q13643 280 aa13.15□□□□□ -0.3
CLIP2-201ENST00000223398 WFDC13Q8IUB5 93 aa13.15□□□□□ -0.3
CLIP2-201ENST00000223398 PKD1L2Q7Z442 2459 aa13.15□□□□□ -0.3
CLIP2-201ENST00000223398 PRR3P79522 188 aaKnown RBP13.15□□□□□ -0.3
CLIP2-201ENST00000223398 TET2Q6N021 2002 aaPredicted RBP13.15□□□□□ -0.3
CLIP2-201ENST00000223398 SMIM20Q8N5G0 67 aa13.14□□□□□ -0.31
CLIP2-201ENST00000223398 EGFEM1PQ0D2K5 195 aa13.14□□□□□ -0.31
CLIP2-201ENST00000223398 CELA1Q9UNI1 258 aa13.14□□□□□ -0.31
CLIP2-201ENST00000223398 KRTAP24-1Q3LI83 254 aa13.13□□□□□ -0.31
CLIP2-201ENST00000223398 SMIM1B2RUZ4 78 aa13.13□□□□□ -0.31
CLIP2-201ENST00000223398 EML5Q05BV3 1969 aa13.12□□□□□ -0.31
CLIP2-201ENST00000223398 RPL28P46779 137 aaKnown RBP13.12□□□□□ -0.31
CLIP2-201ENST00000223398 CIRBP-AS1Q8TBR5 109 aa13.12□□□□□ -0.31
CLIP2-201ENST00000223398 LINC01556Q5JQF7 62 aa13.12□□□□□ -0.31
CLIP2-201ENST00000223398 TRBV10-3A0A0K0K1G6 114 aa13.11□□□□□ -0.31
CLIP2-201ENST00000223398 NHLRC4P0CG21 123 aaPredicted RBP13.1□□□□□ -0.31
CLIP2-201ENST00000223398 ACANP16112 2415 aa13.1□□□□□ -0.31
CLIP2-201ENST00000223398 C1orf137Q5JT78 98 aa13.1□□□□□ -0.31
CLIP2-201ENST00000223398 EPG5Q9HCE0 2579 aa13.09□□□□□ -0.31
CLIP2-201ENST00000223398 REG3GQ6UW15 175 aa13.09□□□□□ -0.31
CLIP2-201ENST00000223398 Q8N2B8 174 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms