RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 LINC00467Q9BRT7 94 aa10.68□□□□□ -0.7
PTPRA-201ENST00000216877 C11orf68Q9H3H3 251 aaKnown RBP10.68□□□□□ -0.7
PTPRA-201ENST00000216877 PSMB8P28062 276 aa10.68□□□□□ -0.7
PTPRA-201ENST00000216877 COX6A2Q02221 97 aa10.68□□□□□ -0.7
PTPRA-201ENST00000216877 NDUFA1O15239 70 aa10.67□□□□□ -0.7
PTPRA-201ENST00000216877 C19orf54Q5BKX5 351 aa10.67□□□□□ -0.7
PTPRA-201ENST00000216877 LINC00474Q9P2X8 69 aa10.67□□□□□ -0.7
PTPRA-201ENST00000216877 IGHV1OR15-1A0A075B7D0 117 aa10.67□□□□□ -0.7
PTPRA-201ENST00000216877 SND1-IT1Q9HBX3 110 aa10.67□□□□□ -0.7
PTPRA-201ENST00000216877 C9orf85Q96MD7 179 aa10.66□□□□□ -0.7
PTPRA-201ENST00000216877 UBE2D4Q9Y2X8 147 aa10.66□□□□□ -0.7
PTPRA-201ENST00000216877 FN1P02751 2386 aaKnown RBP10.66□□□□□ -0.7
PTPRA-201ENST00000216877 BRD3OSQ6XYD6 125 aa10.66□□□□□ -0.7
PTPRA-201ENST00000216877 DOPEY1Q5JWR5 2465 aa10.65□□□□□ -0.7
PTPRA-201ENST00000216877 MIR7-3HGQ8N6C7 128 aa10.65□□□□□ -0.7
PTPRA-201ENST00000216877 CCL19Q99731 98 aa10.65□□□□□ -0.7
PTPRA-201ENST00000216877 TRAV13-2A0A0B4J235 113 aa10.65□□□□□ -0.7
PTPRA-201ENST00000216877 RMI2Q96E14 147 aa10.65□□□□□ -0.71
PTPRA-201ENST00000216877 BPESC1Q9GZL8 116 aa10.65□□□□□ -0.71
PTPRA-201ENST00000216877 F8WDY8 70 aa10.64□□□□□ -0.71
PTPRA-201ENST00000216877 SERP1Q9Y6X1 66 aa10.64□□□□□ -0.71
PTPRA-201ENST00000216877 FAM222AQ5U5X8 452 aa10.64□□□□□ -0.71
PTPRA-201ENST00000216877 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.64□□□□□ -0.71
PTPRA-201ENST00000216877 F8WEM9 126 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 SMIM11BQ8TCY0 68 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 UBL5Q9BZL1 73 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 ITPR1Q14643 2758 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 SAA4P35542 130 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 TMEM86BQ8N661 226 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 C22orf24Q9Y442 160 aa10.63□□□□□ -0.71
PTPRA-201ENST00000216877 TIMM17BO60830 172 aa10.62□□□□□ -0.71
PTPRA-201ENST00000216877 IGHV3OR16-12A0A075B7B8 117 aa10.62□□□□□ -0.71
PTPRA-201ENST00000216877 CDSNQ15517 529 aa10.62□□□□□ -0.71
PTPRA-201ENST00000216877 MOB4Q9Y3A3 225 aa10.62□□□□□ -0.71
PTPRA-201ENST00000216877 U3KQE9 123 aa10.62□□□□□ -0.71
PTPRA-201ENST00000216877 SS18Q15532 418 aa10.61□□□□□ -0.71
PTPRA-201ENST00000216877 BEAN1Q3B7T3 259 aa10.61□□□□□ -0.71
PTPRA-201ENST00000216877 SMIM26A0A096LP01 95 aa10.61□□□□□ -0.71
PTPRA-201ENST00000216877 LINC00337Q8N6G1 96 aa10.6□□□□□ -0.71
PTPRA-201ENST00000216877 KLLNB2CW77 178 aa10.6□□□□□ -0.71
PTPRA-201ENST00000216877 ORMDL1Q9P0S3 153 aa10.6□□□□□ -0.71
PTPRA-201ENST00000216877 HECTD1Q9ULT8 2610 aa10.6□□□□□ -0.71
PTPRA-201ENST00000216877 SNRPD3P62318 126 aaKnown RBP10.59□□□□□ -0.71
PTPRA-201ENST00000216877 ADORA2A-AS1P86434 159 aa10.59□□□□□ -0.71
PTPRA-201ENST00000216877 IGHV3-53P01767 116 aa10.59□□□□□ -0.71
PTPRA-201ENST00000216877 NBPF19A0A087WUL8 3843 aa10.59□□□□□ -0.71
PTPRA-201ENST00000216877 OVOL2Q9BRP0 275 aa10.58□□□□□ -0.72
PTPRA-201ENST00000216877 NDUFA4O00483 81 aa10.58□□□□□ -0.72
PTPRA-201ENST00000216877 ODF3BA8MYP8 253 aa10.57□□□□□ -0.72
PTPRA-201ENST00000216877 Q8N6K4 173 aa10.57□□□□□ -0.72
PTPRA-201ENST00000216877 Q6ZSN1 163 aa10.57□□□□□ -0.72
PTPRA-201ENST00000216877 SCXQ7RTU7 201 aa10.57□□□□□ -0.72
PTPRA-201ENST00000216877 C11orf44Q8N8P7 122 aa10.57□□□□□ -0.72
PTPRA-201ENST00000216877 NDUFC2-KCTD14E9PQ53 114 aa10.56□□□□□ -0.72
PTPRA-201ENST00000216877 LINC00242Q5T6M2 205 aa10.56□□□□□ -0.72
PTPRA-201ENST00000216877 CHCHD7Q9BUK0 85 aa10.56□□□□□ -0.72
PTPRA-201ENST00000216877 ZFP36P26651 326 aaKnown RBP10.56□□□□□ -0.72
PTPRA-201ENST00000216877 Q6ZTI0 123 aa10.56□□□□□ -0.72
PTPRA-201ENST00000216877 H0YGX0 51 aa10.55□□□□□ -0.72
PTPRA-201ENST00000216877 IL17DQ8TAD2 202 aa10.55□□□□□ -0.72
PTPRA-201ENST00000216877 FAM104AQ969W3 186 aa10.55□□□□□ -0.72
PTPRA-201ENST00000216877 MINOS1-NBL1R4GNA1 71 aa10.55□□□□□ -0.72
PTPRA-201ENST00000216877 LAMTOR3Q9UHA4 124 aa10.55□□□□□ -0.72
PTPRA-201ENST00000216877 TRBV7-6A0A0J9YX20 115 aa10.55□□□□□ -0.72
PTPRA-201ENST00000216877 H7BZZ5 65 aa10.54□□□□□ -0.72
PTPRA-201ENST00000216877 SMIM1B2RUZ4 78 aa10.54□□□□□ -0.72
PTPRA-201ENST00000216877 CSMD2Q7Z408 3487 aa10.54□□□□□ -0.72
PTPRA-201ENST00000216877 CCKP06307 115 aa10.53□□□□□ -0.72
PTPRA-201ENST00000216877 HRNRQ86YZ3 2850 aaPredicted RBP10.53□□□□□ -0.72
PTPRA-201ENST00000216877 LRCOL1A6NCL2 159 aa10.53□□□□□ -0.72
PTPRA-201ENST00000216877 UBE2L6O14933 153 aa10.53□□□□□ -0.72
PTPRA-201ENST00000216877 FP248Q71RG6 208 aaPredicted RBP10.53□□□□□ -0.72
PTPRA-201ENST00000216877 DAD1P61803 113 aa10.52□□□□□ -0.73
PTPRA-201ENST00000216877 CFHR3Q02985 330 aa10.52□□□□□ -0.73
PTPRA-201ENST00000216877 CUBNO60494 3623 aa10.52□□□□□ -0.73
PTPRA-201ENST00000216877 C19orf84I3L1E1 186 aa10.51□□□□□ -0.73
PTPRA-201ENST00000216877 PRB2P02812 416 aaPredicted RBP10.51□□□□□ -0.73
PTPRA-201ENST00000216877 TRAV10A0A0B4J240 114 aa10.51□□□□□ -0.73
PTPRA-201ENST00000216877 LINC00482Q8N8I6 264 aa10.51□□□□□ -0.73
PTPRA-201ENST00000216877 BLCAPP62952 87 aa10.5□□□□□ -0.73
PTPRA-201ENST00000216877 AVPP01185 164 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 C5orf56Q8N8D9 126 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 CCL18P55774 89 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 LYPD5Q6UWN5 251 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 IGKV2-28A0A075B6P5 120 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 TRAV7A0A075B6U4 112 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 IGKV2D-28P01615 120 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 PF4P02776 101 aa10.49□□□□□ -0.73
PTPRA-201ENST00000216877 APRG1Q8IVJ8 170 aa10.48□□□□□ -0.73
PTPRA-201ENST00000216877 COX7B2Q8TF08 81 aa10.48□□□□□ -0.73
PTPRA-201ENST00000216877 PRR3P79522 188 aaKnown RBP10.48□□□□□ -0.73
PTPRA-201ENST00000216877 C11orf72Q8NBR9 251 aa10.48□□□□□ -0.73
PTPRA-201ENST00000216877 ANKRD17O75179 2603 aaKnown RBP10.47□□□□□ -0.73
PTPRA-201ENST00000216877 ZNF469Q96JG9 3925 aaPredicted RBP10.46□□□□□ -0.73
PTPRA-201ENST00000216877 A0A087WZ39 114 aa10.46□□□□□ -0.73
PTPRA-201ENST00000216877 H3BUX3 64 aa10.46□□□□□ -0.73
PTPRA-201ENST00000216877 DEFB131AP59861 70 aa10.46□□□□□ -0.73
PTPRA-201ENST00000216877 C6orf226Q5I0X4 101 aa10.46□□□□□ -0.73
PTPRA-201ENST00000216877 AKAP9Q99996 3911 aa10.46□□□□□ -0.74
PTPRA-201ENST00000216877 TRGV1A0A0A0MS02 117 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms