RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TEX49A0A1B0GTD5 131 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1-13P0DP09 117 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 ZFP36P26651 326 aaKnown RBP2.16□□□□□ -2.06
SCN1A-219ENST00000641575 RNASE13Q5GAN3 156 aaKnown RBP2.16□□□□□ -2.06
SCN1A-219ENST00000641575 APRG1Q8IVJ8 170 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV4-69A0A075B6H9 119 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 WI2-2373I1.2A0A1W2PRP0 233 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 ATP11AUNQ6ZP68 121 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 ZNF491Q8N8L2 437 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 ZNF581Q9P0T4 197 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 DHRS4-AS1Q9P1J3 65 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 hDV103S1A0JD37 113 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 K7EN84 100 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 COL8A2P25067 703 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 ADORA2A-AS1P86434 159 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 CHCHD7Q9BUK0 85 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 DKK1O94907 266 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 C11orf71Q6IPW1 123 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 ENHOQ6UWT2 76 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 PIP4P1Q86T03 277 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 C11orf52Q96A22 123 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00467Q9BRT7 94 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 PRORYQ9H606 182 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1-12A0A0C4DH73 117 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 INAFM1C9JVW0 142 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 K7EMT4 169 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 DEFB112Q30KQ8 113 aa2.15□□□□□ -2.06
SCN1A-219ENST00000641575 FXYD2P54710 66 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 FAM19A3Q7Z5A8 133 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 SDHAF1A6NFY7 115 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 RBX1P62877 108 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 LUZP6Q538Z0 58 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV3-16A0A0C4DH30 117 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 COX7BP24311 80 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 AGPAT4-IT1Q9H0P7 198 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 QRFPP83859 136 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 RUSC1-AS1Q66K80 236 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 A0A096LPF7 62 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 A6NDX4 124 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 LY6LH3BQJ8 138 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 ATP1A1-AS1Q5TC04 95 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 V9GYV3 84 aa2.15□□□□□ -2.07
SCN1A-219ENST00000641575 ZNF726P1Q15940 193 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 CLPSL2Q6UWE3 100 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 TMEM14CQ9P0S9 112 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 UFSP1Q6NVU6 142 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 PRO0628Q9UI54 55 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 SRCAPQ6ZRS2 3230 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-219ENST00000641575 A0A1B0GXF2 115 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 LY6G6DO95868 133 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 SPAG11BQ08648 103 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 C2orf70A6NJV1 201 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 COX7CP15954 63 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 SIRPDQ9H106 197 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV7-4-1A0A0J9YVY3 117 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 LECT2O14960 151 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 CD24P25063 80 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV3-21P80748 117 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-219ENST00000641575 DEFB135Q30KP9 77 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 E7EUB6 86 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 CSNK1G2-AS1Q8NCQ2 148 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1-6A0A0C4DH72 117 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 LST1O00453 97 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 LINC01554Q52M75 96 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 Q6ZSR3 168 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 ZNF747Q9BV97 191 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 X6R8D5 127 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV2-24A0A0C4DH68 120 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 SPAG11AQ6PDA7 123 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 SCXQ7RTU7 201 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 CDIP1Q9H305 208 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 LTBP1Q14766 1721 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 A0A0J9YY99 117 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 MLANAQ16655 118 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 FBXL19-AS1Q494R0 122 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 NRGNQ92686 78 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 RITA1Q96K30 269 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 FAM19A5Q7Z5A7 132 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-219ENST00000641575 C5orf38Q86SI9 138 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 WFDC10BQ8IUB3 73 aa2.14□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV4-30-2A0A087WSY4 118 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 LINC01590Q5TEZ4 76 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 A0A1B0GW54 56 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 B3GALT5-AS1P59052 145 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 PLA2G2CQ5R387 149 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV2-23P01705 113 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1D-37A0A075B6S9 117 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 CYYR1Q96J86 154 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 TRBV30A0A0K0K1B3 111 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 E7EQL1 145 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 PSPHP1O15172 72 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 PRAC2D3DTV9 90 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV3-30P01768 117 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV3-33P01772 117 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV3-30-3P0DP02 117 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV3-30-5P0DP03 117 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 Q6ZRM9 215 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV3-32A0A0A0MS00 114 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 MBD6Q96DN6 1003 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms