RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 K7EP34 96 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 Q6ZUT4 128 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 CLUHP3Q96NS8 147 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 IGKV2-28A0A075B6P5 120 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 IGKV2D-28P01615 120 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 IGLV3-1P01715 115 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 NTN5Q8WTR8 489 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-217ENST00000637988 PPDPFQ9H3Y8 114 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 M0R378 163 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 MYO9AB2RTY4 2548 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 IBA57-AS1B1ANH7 110 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 PIEZO1Q92508 2521 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 K7EQG2 157 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 CD164L2Q6UWJ8 174 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 SERP2Q8N6R1 65 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 KRTAP27-1Q3LI81 207 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 Q6ZSR3 168 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 X6R8D5 127 aa4.59□□□□□ -1.67
SCN1A-217ENST00000637988 IGLV2-8P01709 118 aa4.59□□□□□ -1.68
SCN1A-217ENST00000637988 HIST2H2BDQ6DRA6 164 aa4.59□□□□□ -1.68
SCN1A-217ENST00000637988 WIPF3A6NGB9 483 aa4.59□□□□□ -1.68
SCN1A-217ENST00000637988 COLCA2A8K830 154 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 BBC3Q96PG8 261 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-217ENST00000637988 ZNF702PQ9H963 129 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 Q8N9L7 120 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 MUC7Q8TAX7 377 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 CCDC140Q96MF4 163 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 ZNF747Q9BV97 191 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 FRMD6-AS1P0C7T7 363 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 CFAP126Q5VTH2 177 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 C1orf158Q8N1D5 194 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 IGLV2-11P01706 119 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 C1orf229Q6ZS94 237 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-217ENST00000637988 M0QXV9 152 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 CDPF1Q6NVV7 123 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 V9GYY9 64 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 EDN2P20800 178 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 RETNQ9HD89 108 aa4.58□□□□□ -1.68
SCN1A-217ENST00000637988 RSPO1Q2MKA7 263 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-217ENST00000637988 C1orf137Q5JT78 98 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 C20orf203Q8NBC4 194 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 A0A1B0GXF2 115 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 E9PLD3 99 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 LINC00467Q9BRT7 94 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 PRAC2D3DTV9 90 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 ASPHD1Q5U4P2 390 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 XAGE1AQ9HD64 81 aa4.57□□□□□ -1.68
SCN1A-217ENST00000637988 RPL37AP8A6NKH3 93 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 K7EN84 100 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 LINC01556Q5JQF7 62 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 SMR3AQ99954 134 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 K7EP13 123 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 C11orf71Q6IPW1 123 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 TRBV30A0A0K0K1B3 111 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 PLA2G1BP04054 148 aaKnown RBP4.56□□□□□ -1.68
SCN1A-217ENST00000637988 NEXN-AS1Q8NBZ9 246 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 F8WDY8 70 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 CCKP06307 115 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 P0C879 139 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 SPRY4Q9C004 299 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 A0A1W2PNU3 283 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-217ENST00000637988 LST1O00453 97 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 ZNF726P1Q15940 193 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 TP53TG3Q9ULZ0 132 aa4.56□□□□□ -1.68
SCN1A-217ENST00000637988 MRGPRG-AS1Q2M3A8 158 aa4.55□□□□□ -1.68
SCN1A-217ENST00000637988 DCANP1Q8TF63 244 aa4.55□□□□□ -1.68
SCN1A-217ENST00000637988 ATP5EP2Q5VTU8 51 aa4.55□□□□□ -1.68
SCN1A-217ENST00000637988 H3BT86 120 aa4.55□□□□□ -1.68
SCN1A-217ENST00000637988 COL27A1Q8IZC6 1860 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-217ENST00000637988 CLEC2BQ92478 149 aa4.55□□□□□ -1.68
SCN1A-217ENST00000637988 CHCHD7Q9BUK0 85 aa4.55□□□□□ -1.68
SCN1A-217ENST00000637988 POLR3KQ9Y2Y1 108 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-217ENST00000637988 FN1P02751 2386 aaKnown RBP4.54□□□□□ -1.68
SCN1A-217ENST00000637988 FAM236AA0A1B0GUQ0 79 aa4.54□□□□□ -1.68
SCN1A-217ENST00000637988 FAM236BA0A1B0GV22 79 aa4.54□□□□□ -1.68
SCN1A-217ENST00000637988 C3orf84H3BNL1 204 aa4.54□□□□□ -1.68
SCN1A-217ENST00000637988 Q6Q795 121 aa4.54□□□□□ -1.68
SCN1A-217ENST00000637988 DEFB1P60022 68 aa4.54□□□□□ -1.68
SCN1A-217ENST00000637988 C16orf95Q9H693 158 aa4.54□□□□□ -1.68
SCN1A-217ENST00000637988 C1orf147Q96MC9 270 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-217ENST00000637988 C2orf48Q96LS8 159 aa4.53□□□□□ -1.68
SCN1A-217ENST00000637988 RBX1P62877 108 aa4.53□□□□□ -1.68
SCN1A-217ENST00000637988 ESRGQ1W209 222 aa4.53□□□□□ -1.68
SCN1A-217ENST00000637988 IGLC6P0CF74 106 aa4.53□□□□□ -1.68
SCN1A-217ENST00000637988 CEMP1Q6PRD7 247 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-217ENST00000637988 C16orf90A8MZG2 172 aa4.53□□□□□ -1.68
SCN1A-217ENST00000637988 ATP5EP56381 51 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-217ENST00000637988 PIK3CD-AS1Q5SR53 167 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 NAV2Q8IVL1 2488 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 LOC100131303A0A0U1RQF7 123 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 E7EUB6 86 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 XGP55808 180 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 Q6JHZ5 121 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 SLPIP03973 132 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 TEN1Q86WV5 123 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 HIGD1BQ9P298 99 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 ANKRD17O75179 2603 aaKnown RBP4.52□□□□□ -1.69
SCN1A-217ENST00000637988 FAM167A-AS1Q96KT0 104 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 TMEM223A0PJW6 202 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 NDUFC1O43677 76 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms