RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 TRAV8-6A0A0B4J262 113 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 IGHV3-38A0A0C4DH36 116 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 LEPROTL1O95214 131 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 DNAH10OSP0CZ25 163 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 ERASQ7Z444 233 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 TMEM141Q96I45 108 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 HIST1H2BLQ99880 126 aa6.69□□□□□ -1.34
CLN3-261ENST00000637686 TRAV9-2A0A087WT02 112 aa6.68□□□□□ -1.34
CLN3-261ENST00000637686 A0A1B0GUV1 79 aa6.68□□□□□ -1.34
CLN3-261ENST00000637686 IGIPA6NJ69 53 aa6.68□□□□□ -1.34
CLN3-261ENST00000637686 BTF3P20290 206 aaKnown RBP6.68□□□□□ -1.34
CLN3-261ENST00000637686 MRPS36P82909 103 aaKnown RBP6.68□□□□□ -1.34
CLN3-261ENST00000637686 PAPPA-AS1Q5QFB9 102 aa6.68□□□□□ -1.34
CLN3-261ENST00000637686 SPATA12Q7Z6I5 190 aa6.68□□□□□ -1.34
CLN3-261ENST00000637686 FAM19A2Q8N3H0 131 aa6.68□□□□□ -1.34
CLN3-261ENST00000637686 A0A1B0GVY2 172 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 IFITM10A6NMD0 228 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 UBE2L6O14933 153 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 IGHV3-30P01768 117 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 IGHV3-33P01772 117 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 IGHV3-30-3P0DP02 117 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 IGHV3-30-5P0DP03 117 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 AKR1D1P51857 326 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 TNP2Q05952 138 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 LINC01556Q5JQF7 62 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 UBE2D4Q9Y2X8 147 aa6.67□□□□□ -1.34
CLN3-261ENST00000637686 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.66□□□□□ -1.34
CLN3-261ENST00000637686 FABP4P15090 132 aa6.66□□□□□ -1.34
CLN3-261ENST00000637686 Q8N3U1 123 aa6.66□□□□□ -1.34
CLN3-261ENST00000637686 IFI27L1Q96BM0 104 aa6.66□□□□□ -1.34
CLN3-261ENST00000637686 SCGB3A1Q96QR1 104 aa6.66□□□□□ -1.34
CLN3-261ENST00000637686 MAP1LC3CQ9BXW4 147 aa6.66□□□□□ -1.34
CLN3-261ENST00000637686 TRAV12-1A0A0B4J245 112 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 K7EP13 123 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 FGF6P10767 208 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 RPL39P62891 51 aaKnown RBP6.65□□□□□ -1.34
CLN3-261ENST00000637686 PMCHL1Q16048 86 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 PET117Q6UWS5 81 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 C10orf126Q8N4M7 172 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 CHCHD5Q9BSY4 110 aa6.65□□□□□ -1.34
CLN3-261ENST00000637686 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.64□□□□□ -1.35
CLN3-261ENST00000637686 IGKV2-29A2NJV5 120 aaPredicted RBP6.64□□□□□ -1.35
CLN3-261ENST00000637686 Q6ZN92 141 aa6.64□□□□□ -1.35
CLN3-261ENST00000637686 Q6ZRN7 208 aaPredicted RBP6.64□□□□□ -1.35
CLN3-261ENST00000637686 TMEM101Q96IK0 257 aa6.64□□□□□ -1.35
CLN3-261ENST00000637686 PKD1P98161 4303 aa6.64□□□□□ -1.35
CLN3-261ENST00000637686 HECTD4Q9Y4D8 3996 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 IGLV4-3A0A075B6K6 122 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 IBA57-AS1B1ANH7 110 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 SYS1-DBNDD2H3BUS1 97 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 CCL25O15444 150 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 AMMECR1LQ6DCA0 310 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 DGAT2L7PQ6IED9 249 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 NFE4Q86UQ8 179 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 OR5A1Q8NGJ0 315 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 AMELXQ99217 191 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 CDC42SE2Q9NRR3 84 aa6.63□□□□□ -1.35
CLN3-261ENST00000637686 LOC105371267A0A1B0GV96 52 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 C20orf202A1L168 122 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 TMEM262E9PQX1 116 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 C3orf79P0CE67 100 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 GAGE6Q13070 117 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 PMVKQ15126 192 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 OR10D4PQ8NGN7 298 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 BAALCQ8WXS3 180 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 FAM104AQ969W3 186 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 Q9HAA7 133 aa6.62□□□□□ -1.35
CLN3-261ENST00000637686 BIRC6Q9NR09 4857 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 A0A087WX48 190 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 PRSS1P07477 247 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 RBX1P62877 108 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 LINC01545Q5VT33 79 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 TEX43Q6ZNM6 134 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 LINC00173Q6ZV60 143 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 FAM19A3Q7Z5A8 133 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 ZNF664Q8N3J9 261 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 DEFB104AQ8WTQ1 72 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 C2orf88Q9BSF0 95 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 VCX2Q9H322 139 aa6.61□□□□□ -1.35
CLN3-261ENST00000637686 DNAH11Q96DT5 4516 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 F8VRH5 84 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 SEC11AP67812 179 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 JOSD1Q15040 202 aaPredicted RBP6.6□□□□□ -1.35
CLN3-261ENST00000637686 MPV17L2Q567V2 206 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 Q6ZUT4 128 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 CST9LQ9H4G1 147 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 KLK12Q9UKR0 248 aa6.6□□□□□ -1.35
CLN3-261ENST00000637686 KRTDAPP60985 99 aa6.59□□□□□ -1.35
CLN3-261ENST00000637686 ODF1Q14990 250 aa6.59□□□□□ -1.35
CLN3-261ENST00000637686 PRR34Q9NV39 138 aa6.59□□□□□ -1.35
CLN3-261ENST00000637686 PKHD1P08F94 4074 aa6.58□□□□□ -1.36
CLN3-261ENST00000637686 IGLV4-60A0A075B6I1 120 aa6.58□□□□□ -1.36
CLN3-261ENST00000637686 A0A087WTM6 91 aa6.58□□□□□ -1.36
CLN3-261ENST00000637686 PSCAO43653 123 aa6.58□□□□□ -1.36
CLN3-261ENST00000637686 IGLC3P0DOY3 106 aa6.58□□□□□ -1.36
CLN3-261ENST00000637686 PLNP26678 52 aa6.58□□□□□ -1.36
CLN3-261ENST00000637686 DYNC1H1Q14204 4646 aaKnown RBP6.57□□□□□ -1.36
CLN3-261ENST00000637686 TRAV8-3A0A0A6YYJ7 113 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 TRAV8-4A0A0B4J246 113 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 TINCRA0A1B0GVN0 87 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms