RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 CALML5Q9NZT1 146 aa-2.92□□□□□ -2.88
SCN1A-215ENST00000637285 HLA-DRB4X5D2U9 266 aa-2.92□□□□□ -2.88
SCN1A-215ENST00000637285 MYH3P11055 1940 aa-2.92□□□□□ -2.88
SCN1A-215ENST00000637285 ERCC6Q03468 1493 aa-2.92□□□□□ -2.88
SCN1A-215ENST00000637285 GCN1Q92616 2671 aaKnown RBP-2.92□□□□□ -2.88
SCN1A-215ENST00000637285 SETBP1Q9Y6X0 1596 aa-2.92□□□□□ -2.88
SCN1A-215ENST00000637285 YTHDC2Q9H6S0 1430 aaKnown RBP-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 SACSQ9NZJ4 4579 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 TRANK1O15050 2925 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 SSSCA1O60232 199 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 SMIM24O75264 130 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 NIPSNAP2O75323 286 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 POLR2HP52434 150 aaKnown RBP-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 ALX1Q15699 326 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 Q6AWC8 147 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 BANF2Q9H503 90 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 LSM2Q9Y333 95 aaKnown RBP-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 MAGI1Q96QZ7 1491 aaPredicted RBP-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 ANKRD50Q9ULJ7 1429 aa-2.93□□□□□ -2.88
SCN1A-215ENST00000637285 PXDNQ92626 1479 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 C9orf92A6NGG3 77 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 BAGE2Q86Y30 109 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 STX12Q86Y82 276 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 THEM6Q8WUY1 208 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 CCDC115Q96NT0 180 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 NDUFA4L2Q9NRX3 87 aa-2.94□□□□□ -2.88
SCN1A-215ENST00000637285 FAM186AA6NE01 2351 aa-2.95□□□□□ -2.88
SCN1A-215ENST00000637285 MYH8P13535 1937 aa-2.95□□□□□ -2.88
SCN1A-215ENST00000637285 H0YAA0 97 aa-2.95□□□□□ -2.88
SCN1A-215ENST00000637285 SHANK2Q9UPX8 1470 aa-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 DYNC1H1Q14204 4646 aaKnown RBP-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 UQCR11O14957 56 aa-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 APOC3P02656 99 aa-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 RGS21Q2M5E4 152 aa-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 Q8N8P6 123 aa-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 KIF21AQ7Z4S6 1674 aa-2.96□□□□□ -2.88
SCN1A-215ENST00000637285 MT-ND4LP03901 98 aa-2.97□□□□□ -2.88
SCN1A-215ENST00000637285 PAEPP09466 180 aa-2.97□□□□□ -2.88
SCN1A-215ENST00000637285 CTXN2P0C2S0 81 aa-2.97□□□□□ -2.88
SCN1A-215ENST00000637285 CCL8P80075 99 aa-2.97□□□□□ -2.88
SCN1A-215ENST00000637285 S100A5P33763 92 aa-2.98□□□□□ -2.89
SCN1A-215ENST00000637285 SCIMPQ6UWF3 145 aa-2.98□□□□□ -2.89
SCN1A-215ENST00000637285 PARVGQ9HBI0 331 aa-2.98□□□□□ -2.89
SCN1A-215ENST00000637285 REV3LO60673 3130 aa-2.98□□□□□ -2.89
SCN1A-215ENST00000637285 TRIOO75962 3097 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 RELNP78509 3460 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 DNAH7Q8WXX0 4024 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 DAPK1P53355 1430 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 ZCCHC11Q5TAX3 1644 aaKnown RBP-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 PFDN1O60925 122 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 CBLN1P23435 193 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 SERPINB1P30740 379 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 TPPP2P59282 170 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 REEP5Q00765 189 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 S100A7L2Q5SY68 101 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 MIC13Q5XKP0 118 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 LENEPQ9Y5L5 61 aa-2.99□□□□□ -2.89
SCN1A-215ENST00000637285 ARHGEF10O15013 1369 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 ITPR1Q14643 2758 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 A0A1W2PRE2 83 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 DPM2O94777 84 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 DEFB1P60022 68 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 CFAP53Q96M91 514 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 CRIPTQ9P021 101 aa-3□□□□□ -2.89
SCN1A-215ENST00000637285 NBEAL2Q6ZNJ1 2754 aa-3.01□□□□□ -2.89
SCN1A-215ENST00000637285 K7EP34 96 aa-3.01□□□□□ -2.89
SCN1A-215ENST00000637285 C10orf128Q5T292 105 aa-3.01□□□□□ -2.89
SCN1A-215ENST00000637285 TMEM78Q5T7P6 136 aa-3.01□□□□□ -2.89
SCN1A-215ENST00000637285 TMEM244Q5VVB8 128 aa-3.01□□□□□ -2.89
SCN1A-215ENST00000637285 TRBV20-1A0A075B6N2 111 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 E2F6O75461 281 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 C10orf113Q5VZT2 155 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 PPP1R2P3Q6NXS1 205 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 FDCSPQ8NFU4 85 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 MRPL40Q9NQ50 206 aaKnown RBP-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 PDE4DIPQ5VU43 2346 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 CEP290O15078 2479 aa-3.02□□□□□ -2.89
SCN1A-215ENST00000637285 SIX6O95475 246 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 IL5P05113 134 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 CTAGE3PQ8IX95 158 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 SEC11CQ9BY50 192 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 NWD2Q9ULI1 1742 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 OVOS2A0A0G2JMS6 1433 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 DISP2A7MBM2 1401 aa-3.03□□□□□ -2.89
SCN1A-215ENST00000637285 TRBV7-3A0A075B6L6 115 aa-3.04□□□□□ -2.9
SCN1A-215ENST00000637285 TMEM263Q8WUH6 116 aaKnown RBP-3.04□□□□□ -2.9
SCN1A-215ENST00000637285 AQP10Q96PS8 301 aa-3.04□□□□□ -2.9
SCN1A-215ENST00000637285 IGLC7A0M8Q6 106 aa-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 HEPN1Q6WQI6 88 aa-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 OR8I2Q8N0Y5 310 aa-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 LINC01558Q9Y6Z2 57 aa-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 NKTRP30414 1462 aaKnown RBP-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 RAPGEF6Q8TEU7 1601 aa-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 PATJQ8NI35 1801 aa-3.05□□□□□ -2.9
SCN1A-215ENST00000637285 CEP295Q9C0D2 2601 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 HCG22E2RYF7 251 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 I3L3M4 83 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 ACACBO00763 2458 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 SNCGO76070 127 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 MT1XP80297 61 aa-3.06□□□□□ -2.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms