RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 E7EQL1 145 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 PRR9Q5T870 116 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 RNF5Q99942 180 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 KAAG1Q9UBP8 84 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 EP300Q09472 2414 aaPredicted RBP5□□□□□ -1.61
SCN1A-213ENST00000636759 IGLV11-55A0A075B6I3 123 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 TRBV6-5A0A0K0K1A5 114 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 LYPD2Q6UXB3 125 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 C11orf68Q9H3H3 251 aaKnown RBP5□□□□□ -1.61
SCN1A-213ENST00000636759 TRAV13-2A0A0B4J235 113 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 NCR3O14931 201 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 CTSGP08311 255 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 Q9H8V8 135 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 C22orf24Q9Y442 160 aa5□□□□□ -1.61
SCN1A-213ENST00000636759 BCE1O60756 84 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 IGLV1-47P01700 117 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 PRB3Q04118 309 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-213ENST00000636759 RNASE13Q5GAN3 156 aaKnown RBP4.99□□□□□ -1.61
SCN1A-213ENST00000636759 Q96MF0 132 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 NDUFA1O15239 70 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 DAD1P61803 113 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 ANKRD11Q6UB99 2663 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-213ENST00000636759 PLAC8L1A1L4L8 177 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 F8W735 103 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-213ENST00000636759 ZNF561-AS1K7EIQ3 104 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 IGF1P05019 195 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 CELSR1Q9NYQ6 3014 aa4.99□□□□□ -1.61
SCN1A-213ENST00000636759 ZFHX2Q9C0A1 2572 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-213ENST00000636759 TRBV10-3A0A0K0K1G6 114 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 H0YGX0 51 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 RNASE3P12724 160 aaKnown RBP4.98□□□□□ -1.61
SCN1A-213ENST00000636759 SAA4P35542 130 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 CCL17Q92583 94 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 RP1L1Q8IWN7 2480 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-213ENST00000636759 PAX4O43316 350 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 PF4P02776 101 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 LINC00315P59091 139 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 PIK3CD-AS1Q5SR53 167 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 ZFAND2AQ8N6M9 145 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 KIF25-AS1Q9Y6Z4 181 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 ADORA2A-AS1P86434 159 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 CFHR3Q02985 330 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 BPESC1Q9GZL8 116 aa4.98□□□□□ -1.61
SCN1A-213ENST00000636759 F6UB75 175 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 LECT2O14960 151 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 PRR15Q8IV56 129 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 MUC6Q6W4X9 2439 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 ROS1P08922 2347 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 C15orf32Q32M92 178 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 GVINP1Q7Z2Y8 2422 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 C9orf129Q5T035 196 aaKnown RBP4.97□□□□□ -1.61
SCN1A-213ENST00000636759 DGAT2L7PQ6IED9 249 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 ORMDL1Q9P0S3 153 aa4.97□□□□□ -1.61
SCN1A-213ENST00000636759 MIR7-3HGQ8N6C7 128 aa4.96□□□□□ -1.61
SCN1A-213ENST00000636759 ABCA4P78363 2273 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 CLPSL1A2RUU4 121 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 JMJD7-PLA2G4BH0Y9G9 81 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 MIFP14174 115 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 GRNP28799 593 aaKnown RBP4.96□□□□□ -1.62
SCN1A-213ENST00000636759 KLK9Q2XQG4 91 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 KLK9Q9UKQ9 250 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 A0A087WYN8 130 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 M0QY20 66 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 ESRGQ1W209 222 aa4.96□□□□□ -1.62
SCN1A-213ENST00000636759 PTPRQQ9UMZ3 2332 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 HAMPP81172 84 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 RPL36AP83881 106 aaKnown RBP4.95□□□□□ -1.62
SCN1A-213ENST00000636759 C11orf71Q6IPW1 123 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 Q6ZRU5 148 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 C1orf158Q8N1D5 194 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 RPL36ALQ969Q0 106 aaKnown RBP4.95□□□□□ -1.62
SCN1A-213ENST00000636759 CDKN2A-AS1Q9UH64 79 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 FAM110DQ8TAY7 271 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-213ENST00000636759 LINC01560Q8TB33 94 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 DYNLRB2Q8TF09 96 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 OBSCN-AS1Q96MR7 158 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 CNOT1A5YKK6 2376 aaKnown RBP4.95□□□□□ -1.62
SCN1A-213ENST00000636759 CLEC19AQ6UXS0 136 aa4.95□□□□□ -1.62
SCN1A-213ENST00000636759 IGHV1OR15-1A0A075B7D0 117 aa4.94□□□□□ -1.62
SCN1A-213ENST00000636759 SLPIP03973 132 aa4.93□□□□□ -1.62
SCN1A-213ENST00000636759 MAP1BP46821 2468 aaKnown RBP4.93□□□□□ -1.62
SCN1A-213ENST00000636759 RNASE1P07998 156 aaKnown RBP4.93□□□□□ -1.62
SCN1A-213ENST00000636759 ECSCRQ19T08 205 aa4.93□□□□□ -1.62
SCN1A-213ENST00000636759 C4orf48Q5BLP8 95 aa4.93□□□□□ -1.62
SCN1A-213ENST00000636759 SMIM11BQ8TCY0 68 aa4.93□□□□□ -1.62
SCN1A-213ENST00000636759 SND1-IT1Q9HBX3 110 aa4.93□□□□□ -1.62
SCN1A-213ENST00000636759 DPM3Q9P2X0 92 aa4.93□□□□□ -1.62
SCN1A-213ENST00000636759 IGKV3-7A0A075B6H7 116 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 A0A087WZ39 114 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 FUSP35637 526 aaKnown RBP eCLIP4.92□□□□□ -1.62
SCN1A-213ENST00000636759 DEFB1P60022 68 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 NPBQ8NG41 125 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 TRAV10A0A0B4J240 114 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 ODF3BA8MYP8 253 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 FAM229BQ4G0N7 80 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 STHQ8IWL8 128 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 Q8N6K4 173 aa4.92□□□□□ -1.62
SCN1A-213ENST00000636759 ANK3Q12955 4377 aaKnown RBP4.91□□□□□ -1.62
SCN1A-213ENST00000636759 PKDREJQ9NTG1 2253 aa4.91□□□□□ -1.62
SCN1A-213ENST00000636759 LYNX1G3V0Z9 82 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms