RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 K7ERJ3 54 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 CIDEAO60543 219 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 PMVKQ15126 192 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 ZFP2Q6ZN57 461 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 PRADC1Q9BSG0 188 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 C11orf68Q9H3H3 251 aaKnown RBP10.05□□□□□ -0.8
CLN3-242ENST00000635958 SPANXB1Q9NS25 103 aaPredicted RBP10.05□□□□□ -0.8
CLN3-242ENST00000635958 TRAV4A0A0B4J268 109 aa10.04□□□□□ -0.8
CLN3-242ENST00000635958 TEX48A0A1B0GUV7 120 aa10.04□□□□□ -0.8
CLN3-242ENST00000635958 TMEM238C9JI98 176 aa10.04□□□□□ -0.8
CLN3-242ENST00000635958 RHODO00212 210 aa10.04□□□□□ -0.8
CLN3-242ENST00000635958 DEFB4AO15263 64 aa10.04□□□□□ -0.8
CLN3-242ENST00000635958 POLR2KP53803 58 aaKnown RBP10.04□□□□□ -0.8
CLN3-242ENST00000635958 FAM222AQ5U5X8 452 aa10.04□□□□□ -0.8
CLN3-242ENST00000635958 ZNF815PA8K554 130 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 GAGE7O76087 117 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 GAGE12FP0CL80 117 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 GAGE12GP0CL81 117 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 GAGE12IP0CL82 117 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 DNAH9Q9NYC9 4486 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 C11orf86A6NJI1 115 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 SPART-AS1P0CW21 52 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 RHOHQ15669 191 aa10.03□□□□□ -0.8
CLN3-242ENST00000635958 RPL39LQ96EH5 51 aaKnown RBP10.03□□□□□ -0.8
CLN3-242ENST00000635958 HUWE1Q7Z6Z7 4374 aaKnown RBP10.02□□□□□ -0.8
CLN3-242ENST00000635958 TRGV2A0A075B6R0 118 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 IGIPA6NJ69 53 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 UBE2D1P51668 147 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 SRSF9Q13242 221 aaKnown RBP eCLIP10.02□□□□□ -0.81
CLN3-242ENST00000635958 FAM74A4Q5TZK3 123 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 SCGB1D4Q6XE38 83 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 EDA2RQ9HAV5 297 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 TGP01266 2768 aa10.02□□□□□ -0.81
CLN3-242ENST00000635958 TRBV20-1A0A075B6N2 111 aa10.01□□□□□ -0.81
CLN3-242ENST00000635958 TRBV27A0A0K0K1C4 114 aa10.01□□□□□ -0.81
CLN3-242ENST00000635958 DEFB130BP0DP73 79 aa10□□□□□ -0.81
CLN3-242ENST00000635958 DEFB130AP0DP74 79 aa10□□□□□ -0.81
CLN3-242ENST00000635958 SUMO4Q6EEV6 95 aa10□□□□□ -0.81
CLN3-242ENST00000635958 CELA1Q9UNI1 258 aa10□□□□□ -0.81
CLN3-242ENST00000635958 GAGE12HA6NDE8 117 aa10□□□□□ -0.81
CLN3-242ENST00000635958 F5H697 171 aa10□□□□□ -0.81
CLN3-242ENST00000635958 H3BMG7 143 aa10□□□□□ -0.81
CLN3-242ENST00000635958 M0QY20 66 aa10□□□□□ -0.81
CLN3-242ENST00000635958 IGHV3-53P01767 116 aa10□□□□□ -0.81
CLN3-242ENST00000635958 WFDC2Q14508 124 aa10□□□□□ -0.81
CLN3-242ENST00000635958 PRO0461Q9UI25 63 aa10□□□□□ -0.81
CLN3-242ENST00000635958 NHLRC4P0CG21 123 aaPredicted RBP9.99□□□□□ -0.81
CLN3-242ENST00000635958 ZNF56Q15929 161 aa9.99□□□□□ -0.81
CLN3-242ENST00000635958 Q6ZSN1 163 aa9.99□□□□□ -0.81
CLN3-242ENST00000635958 IGHV3-73A0A0B4J1V6 119 aa9.98□□□□□ -0.81
CLN3-242ENST00000635958 A0A0J9YWU9 116 aa9.98□□□□□ -0.81
CLN3-242ENST00000635958 NFE4Q86UQ8 179 aa9.98□□□□□ -0.81
CLN3-242ENST00000635958 PGPEP1Q9NXJ5 209 aa9.98□□□□□ -0.81
CLN3-242ENST00000635958 DAD1P61803 113 aa9.98□□□□□ -0.81
CLN3-242ENST00000635958 FHL2Q14192 279 aa9.98□□□□□ -0.81
CLN3-242ENST00000635958 IGLV4-69A0A075B6H9 119 aa9.97□□□□□ -0.81
CLN3-242ENST00000635958 CRYBA4P53673 196 aa9.97□□□□□ -0.81
CLN3-242ENST00000635958 SLC25A29Q8N8R3 303 aa9.97□□□□□ -0.81
CLN3-242ENST00000635958 COL7A1Q02388 2944 aa9.97□□□□□ -0.81
CLN3-242ENST00000635958 A0A0J9YY99 117 aa9.96□□□□□ -0.81
CLN3-242ENST00000635958 M0QXV9 152 aa9.96□□□□□ -0.81
CLN3-242ENST00000635958 UBE2D3P61077 147 aa9.96□□□□□ -0.81
CLN3-242ENST00000635958 UBE2D2P62837 147 aa9.96□□□□□ -0.81
CLN3-242ENST00000635958 TRBV6-4A0A1B0GX49 114 aa9.96□□□□□ -0.82
CLN3-242ENST00000635958 SDHAF1A6NFY7 115 aa9.96□□□□□ -0.82
CLN3-242ENST00000635958 ETDBQ3ZM63 59 aa9.96□□□□□ -0.82
CLN3-242ENST00000635958 LEPROTO15243 131 aa9.95□□□□□ -0.82
CLN3-242ENST00000635958 TSHBP01222 138 aa9.95□□□□□ -0.82
CLN3-242ENST00000635958 ATP5G1P05496 136 aa9.95□□□□□ -0.82
CLN3-242ENST00000635958 LGALS3P17931 250 aaKnown RBP9.95□□□□□ -0.82
CLN3-242ENST00000635958 MTURNQ8N3F0 131 aa9.95□□□□□ -0.82
CLN3-242ENST00000635958 PLEKHB2Q96CS7 222 aa9.95□□□□□ -0.82
CLN3-242ENST00000635958 STAB2Q8WWQ8 2551 aa9.95□□□□□ -0.82
CLN3-242ENST00000635958 TRGV4A0A0C4DH28 118 aa9.94□□□□□ -0.82
CLN3-242ENST00000635958 TRBV10-1A0A0K0K1A3 114 aa9.94□□□□□ -0.82
CLN3-242ENST00000635958 APOMO95445 188 aa9.94□□□□□ -0.82
CLN3-242ENST00000635958 C11orf45Q8TAV5 145 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 DNAJC30Q96LL9 226 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 Q9UF83 564 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 J3QQQ9 107 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 K7EQD1 137 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 TSPAN13O95857 204 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 IGHV3-30P01768 117 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 P0DMU3 169 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 FAM231AP0DMU4 169 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 FAM231CP0DMU5 169 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 IGHV3-30-5P0DP03 117 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 FOXI1Q12951 378 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 PRO0255Q9UI72 69 aa9.93□□□□□ -0.82
CLN3-242ENST00000635958 I3L3M4 83 aa9.92□□□□□ -0.82
CLN3-242ENST00000635958 TMEM170BQ5T4T1 132 aa9.92□□□□□ -0.82
CLN3-242ENST00000635958 C10orf126Q8N4M7 172 aa9.92□□□□□ -0.82
CLN3-242ENST00000635958 PRO1854Q9UHT4 67 aa9.92□□□□□ -0.82
CLN3-242ENST00000635958 PYGO1Q9Y3Y4 419 aa9.92□□□□□ -0.82
CLN3-242ENST00000635958 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.91□□□□□ -0.82
CLN3-242ENST00000635958 A0A1B0GV72 72 aa9.91□□□□□ -0.82
CLN3-242ENST00000635958 SH2D6Q7Z4S9 175 aa9.91□□□□□ -0.82
CLN3-242ENST00000635958 PPDPFLQ8WWR9 84 aa9.91□□□□□ -0.82
CLN3-242ENST00000635958 LOC107984156A0A0G2JMH3 177 aa9.91□□□□□ -0.82
CLN3-242ENST00000635958 TMEM223A0PJW6 202 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms