RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 Q5VV11 94 aa-2.14□□□□□ -2.75
SCN1A-211ENST00000635893 SMIM20Q8N5G0 67 aa-2.14□□□□□ -2.75
SCN1A-211ENST00000635893 FAM24BQ8N5W8 94 aa-2.14□□□□□ -2.75
SCN1A-211ENST00000635893 CEP19Q96LK0 163 aa-2.14□□□□□ -2.75
SCN1A-211ENST00000635893 PTPRMP28827 1452 aa-2.14□□□□□ -2.75
SCN1A-211ENST00000635893 PPIP5K1Q6PFW1 1433 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 NEFHP12036 1026 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 GNG3P63215 75 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 BRK1Q8WUW1 75 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 USMG5Q96IX5 58 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 TAS2R8Q9NYW2 309 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 LRRC37A2A6NM11 1700 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 MYH7P12883 1935 aa-2.15□□□□□ -2.75
SCN1A-211ENST00000635893 MYOM3Q5VTT5 1437 aa-2.16□□□□□ -2.75
SCN1A-211ENST00000635893 ALKQ9UM73 1620 aa-2.16□□□□□ -2.75
SCN1A-211ENST00000635893 TRBV7-6A0A0J9YX20 115 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 PNMA8CA0A1B0GUJ8 204 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 H0YJX3 145 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 SLC25A5P05141 298 aaKnown RBP-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 RPS28P62857 69 aaKnown RBP-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 TMED2Q15363 201 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 NDUFA11Q86Y39 141 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 SPRR4Q96PI1 79 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 WFDC6Q9BQY6 131 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 FYCO1Q9BQS8 1478 aa-2.16□□□□□ -2.76
SCN1A-211ENST00000635893 TULP4Q9NRJ4 1543 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 F8VRH5 84 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 PGRMC1O00264 195 aaKnown RBP-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 LELP1Q5T871 98 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 TMEM91Q6ZNR0 172 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 WFDC13Q8IUB5 93 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 STX19Q8N4C7 294 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 LAMTOR2Q9Y2Q5 125 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 MARF1Q9Y4F3 1742 aaKnown RBP-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 CCDC171Q6TFL3 1326 aa-2.17□□□□□ -2.76
SCN1A-211ENST00000635893 DCHS1Q96JQ0 3298 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 POLA1P09884 1462 aaPredicted RBP-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 UQCRQO14949 82 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 EDDM3BP56851 147 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 REEP5Q00765 189 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 PLGLB1Q02325 96 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 Q6JHZ5 121 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 LINC01600Q96MT4 127 aa-2.18□□□□□ -2.76
SCN1A-211ENST00000635893 MAGI2Q86UL8 1455 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 WDFY4Q6ZS81 3184 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 TRAV12-3A0A0B4J271 114 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 TRBV7-4A0A0J9YYF1 115 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 H7BZZ5 65 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 SPCS2Q15005 226 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 HSD17B12Q53GQ0 312 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 MRPL34Q9BQ48 92 aaKnown RBP-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 CDC42SE2Q9NRR3 84 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 METTL1Q9UBP6 276 aaKnown RBP-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 UFC1Q9Y3C8 167 aa-2.19□□□□□ -2.76
SCN1A-211ENST00000635893 TRAV2A0A0B4J234 112 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 SPAARA0A1B0GVQ0 90 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 HSD11B1P28845 292 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 HEPN1Q6WQI6 88 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 AKAP14Q86UN6 197 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 BAGE3Q86Y29 109 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 DYNLRB2Q8TF09 96 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 ERG28Q9UKR5 140 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 FRYLO94915 3013 aa-2.2□□□□□ -2.76
SCN1A-211ENST00000635893 ARHGEF12Q9NZN5 1544 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 LINC00959A0A1B0GUT2 108 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 TCRAP04437 139 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 CMPK1P30085 196 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 RPL22P35268 128 aaKnown RBP-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 MRPS15P82914 257 aaKnown RBP-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 Q8N8P6 123 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 CRIPTQ9P021 101 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 NDUFA12Q9UI09 145 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 SETBP1Q9Y6X0 1596 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 EP400Q96L91 3159 aa-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 NKTRP30414 1462 aaKnown RBP-2.21□□□□□ -2.76
SCN1A-211ENST00000635893 MYH3P11055 1940 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 TRAV30A0A087WSZ9 112 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 ARPC5O15511 151 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 PIPP12273 146 aaPredicted RBP-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 RPS29P62273 56 aaKnown RBP-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 ATP11AUNQ6ZP68 121 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 VSTM2AQ8TAG5 236 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 SLC35B3Q9H1N7 401 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 TRAPPC2LQ9UL33 140 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 MED31Q9Y3C7 131 aa-2.22□□□□□ -2.76
SCN1A-211ENST00000635893 A2MP01023 1474 aa-2.22□□□□□ -2.77
SCN1A-211ENST00000635893 PSME4Q14997 1843 aa-2.23□□□□□ -2.77
SCN1A-211ENST00000635893 SMIM6P0DI80 62 aa-2.23□□□□□ -2.77
SCN1A-211ENST00000635893 PRLHP81277 87 aa-2.23□□□□□ -2.77
SCN1A-211ENST00000635893 DCUN1D2Q6PH85 259 aa-2.23□□□□□ -2.77
SCN1A-211ENST00000635893 CDKN2A-AS1Q9UH64 79 aa-2.23□□□□□ -2.77
SCN1A-211ENST00000635893 IBTKQ9P2D0 1353 aaPredicted RBP-2.23□□□□□ -2.77
SCN1A-211ENST00000635893 MYH8P13535 1937 aa-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 HIST1H1BP16401 226 aaKnown RBP-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 S100A5P33763 92 aa-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 TCTAP57738 103 aa-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 SMIM4Q8WVI0 70 aa-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 NDUFA4L2Q9NRX3 87 aa-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 LINC00846Q9NV44 126 aa-2.24□□□□□ -2.77
SCN1A-211ENST00000635893 PARVGQ9HBI0 331 aa-2.25□□□□□ -2.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms