RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PRR34Q9NV39 138 aa12.05□□□□□ -0.48
CLN3-239ENST00000628023 DGAT2L7PQ6IED9 249 aa12.04□□□□□ -0.48
CLN3-239ENST00000628023 MAPKAPK5-AS1Q8N8E1 139 aa12.04□□□□□ -0.48
CLN3-239ENST00000628023 RYR1P21817 5038 aa12.04□□□□□ -0.48
CLN3-239ENST00000628023 CBLN2Q8IUK8 224 aa12.03□□□□□ -0.48
CLN3-239ENST00000628023 TRAPPC1Q9Y5R8 145 aa12.03□□□□□ -0.48
CLN3-239ENST00000628023 IGLV10-54A0A075B6I4 117 aa12.02□□□□□ -0.49
CLN3-239ENST00000628023 PRSS47A8MTI9 375 aa12.02□□□□□ -0.49
CLN3-239ENST00000628023 MRPL52Q86TS9 123 aaKnown RBP12.02□□□□□ -0.49
CLN3-239ENST00000628023 Q8N8P6 123 aa12.02□□□□□ -0.49
CLN3-239ENST00000628023 KRTAP4-5Q9BYR2 181 aa12.02□□□□□ -0.49
CLN3-239ENST00000628023 NXT2Q9NPJ8 142 aaKnown RBP12.02□□□□□ -0.49
CLN3-239ENST00000628023 TRAV8-4A0A0B4J246 113 aa12□□□□□ -0.49
CLN3-239ENST00000628023 LECT2O14960 151 aa12□□□□□ -0.49
CLN3-239ENST00000628023 BAALCQ8WXS3 180 aa12□□□□□ -0.49
CLN3-239ENST00000628023 UBE2D4Q9Y2X8 147 aa12□□□□□ -0.49
CLN3-239ENST00000628023 IFI27P40305 119 aaPredicted RBP11.99□□□□□ -0.49
CLN3-239ENST00000628023 RPL39P62891 51 aaKnown RBP11.99□□□□□ -0.49
CLN3-239ENST00000628023 PRSS3P2Q8NHM4 247 aa11.99□□□□□ -0.49
CLN3-239ENST00000628023 ALKBH7Q9BT30 221 aaPredicted RBP11.99□□□□□ -0.49
CLN3-239ENST00000628023 LRCOL1A6NCL2 159 aa11.98□□□□□ -0.49
CLN3-239ENST00000628023 ORMDL2Q53FV1 153 aa11.98□□□□□ -0.49
CLN3-239ENST00000628023 ZNF664Q8N3J9 261 aa11.98□□□□□ -0.49
CLN3-239ENST00000628023 YPEL4Q96NS1 127 aa11.98□□□□□ -0.49
CLN3-239ENST00000628023 CDC42SE2Q9NRR3 84 aa11.98□□□□□ -0.49
CLN3-239ENST00000628023 K7EMI3 77 aa11.97□□□□□ -0.49
CLN3-239ENST00000628023 KRTAP10-2P60368 255 aa11.97□□□□□ -0.49
CLN3-239ENST00000628023 Q8N1X5 172 aa11.97□□□□□ -0.49
CLN3-239ENST00000628023 TIMM21Q9BVV7 248 aa11.97□□□□□ -0.49
CLN3-239ENST00000628023 SPANXA1Q9NS26 97 aa11.97□□□□□ -0.49
CLN3-239ENST00000628023 CSDC2Q9Y534 153 aaKnown RBP11.97□□□□□ -0.49
CLN3-239ENST00000628023 RNASE13Q5GAN3 156 aaKnown RBP11.96□□□□□ -0.49
CLN3-239ENST00000628023 Q6ZUT4 128 aa11.96□□□□□ -0.49
CLN3-239ENST00000628023 Q8N814 137 aa11.96□□□□□ -0.49
CLN3-239ENST00000628023 WFDC2Q14508 124 aa11.95□□□□□ -0.5
CLN3-239ENST00000628023 FA2HQ7L5A8 372 aa11.95□□□□□ -0.5
CLN3-239ENST00000628023 CYSLTR1Q9Y271 337 aa11.95□□□□□ -0.5
CLN3-239ENST00000628023 FUSP35637 526 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLN3-239ENST00000628023 SS18Q15532 418 aa11.94□□□□□ -0.5
CLN3-239ENST00000628023 CHCHD10Q8WYQ3 142 aaPredicted RBP11.94□□□□□ -0.5
CLN3-239ENST00000628023 PGPEP1Q9NXJ5 209 aa11.94□□□□□ -0.5
CLN3-239ENST00000628023 LINC00959A0A1B0GUT2 108 aa11.93□□□□□ -0.5
CLN3-239ENST00000628023 GAGE12HA6NDE8 117 aa11.93□□□□□ -0.5
CLN3-239ENST00000628023 G0S2P27469 103 aa11.93□□□□□ -0.5
CLN3-239ENST00000628023 C14orf177Q52M58 125 aa11.93□□□□□ -0.5
CLN3-239ENST00000628023 CDPF1Q6NVV7 123 aa11.93□□□□□ -0.5
CLN3-239ENST00000628023 C2orf66Q6UXQ4 117 aa11.93□□□□□ -0.5
CLN3-239ENST00000628023 ABCA13Q86UQ4 5058 aa11.92□□□□□ -0.5
CLN3-239ENST00000628023 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.92□□□□□ -0.5
CLN3-239ENST00000628023 IGLV5-52A0A0A0MRZ9 124 aa11.92□□□□□ -0.5
CLN3-239ENST00000628023 USP17L23D6RBM5 183 aa11.92□□□□□ -0.5
CLN3-239ENST00000628023 XCL1P47992 114 aa11.92□□□□□ -0.5
CLN3-239ENST00000628023 KRTAP26-1Q6PEX3 210 aa11.92□□□□□ -0.5
CLN3-239ENST00000628023 NTN5Q8WTR8 489 aaPredicted RBP11.92□□□□□ -0.5
CLN3-239ENST00000628023 HSPG2P98160 4391 aa11.92□□□□□ -0.5
CLN3-239ENST00000628023 TRAV13-1A0A0B4J241 112 aa11.91□□□□□ -0.5
CLN3-239ENST00000628023 CCL25O15444 150 aa11.91□□□□□ -0.5
CLN3-239ENST00000628023 MRPS36P82909 103 aaKnown RBP11.91□□□□□ -0.5
CLN3-239ENST00000628023 OPRPNQ99935 248 aaPredicted RBP11.91□□□□□ -0.5
CLN3-239ENST00000628023 C18orf32Q8TCD1 76 aa11.9□□□□□ -0.5
CLN3-239ENST00000628023 PYGO1Q9Y3Y4 419 aa11.9□□□□□ -0.5
CLN3-239ENST00000628023 IFITM10A6NMD0 228 aa11.89□□□□□ -0.51
CLN3-239ENST00000628023 Q6ZN92 141 aa11.89□□□□□ -0.51
CLN3-239ENST00000628023 IGLV4-3A0A075B6K6 122 aa11.88□□□□□ -0.51
CLN3-239ENST00000628023 C1orf196B1AJZ1 125 aa11.88□□□□□ -0.51
CLN3-239ENST00000628023 SCO1O75880 301 aa11.88□□□□□ -0.51
CLN3-239ENST00000628023 TMEM141Q96I45 108 aa11.88□□□□□ -0.51
CLN3-239ENST00000628023 AP5S1Q9NUS5 200 aa11.88□□□□□ -0.51
CLN3-239ENST00000628023 LRP1BQ9NZR2 4599 aa11.87□□□□□ -0.51
CLN3-239ENST00000628023 TEX43Q6ZNM6 134 aa11.87□□□□□ -0.51
CLN3-239ENST00000628023 TOMM6Q96B49 74 aa11.87□□□□□ -0.51
CLN3-239ENST00000628023 LINC01546A6NGU7 62 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 TRGC2P03986 189 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 RAB5BP61020 215 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 FOXI1Q12951 378 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 CFAP161Q6P656 301 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 CD164L2Q6UWJ8 174 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 C2orf88Q9BSF0 95 aa11.86□□□□□ -0.51
CLN3-239ENST00000628023 SCGB3A1Q96QR1 104 aa11.85□□□□□ -0.51
CLN3-239ENST00000628023 hDV102S1A0JD36 115 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 LINC01549A6NIU2 74 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 COLCA2A8K830 154 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 EPM2AB3EWF7 344 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 PRSS1P07477 247 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 NPSP0C0P6 89 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 LINC00614P0C842 121 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 GCSHP23434 173 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 PAPPA-AS1Q5QFB9 102 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 FAM104AQ969W3 186 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 TIMM17AQ99595 171 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 VCX2Q9H322 139 aa11.84□□□□□ -0.51
CLN3-239ENST00000628023 IGIPA6NJ69 53 aa11.83□□□□□ -0.52
CLN3-239ENST00000628023 COX7A2LO14548 114 aa11.82□□□□□ -0.52
CLN3-239ENST00000628023 MALP21145 153 aa11.82□□□□□ -0.52
CLN3-239ENST00000628023 ERASQ7Z444 233 aa11.82□□□□□ -0.52
CLN3-239ENST00000628023 HIGD2BQ4VC39 106 aa11.81□□□□□ -0.52
CLN3-239ENST00000628023 ZC2HC1BQ5TFG8 222 aa11.81□□□□□ -0.52
CLN3-239ENST00000628023 C15orf56Q8N910 161 aa11.81□□□□□ -0.52
CLN3-239ENST00000628023 URB1-AS1Q96HZ7 61 aa11.81□□□□□ -0.52
CLN3-239ENST00000628023 IGHV1-58A0A0C4DH39 117 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms