RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 IQCJQ1A5X6 159 aa12.4□□□□□ -0.42
CDX1-202ENST00000616154 DEFB104AQ8WTQ1 72 aa12.4□□□□□ -0.42
CDX1-202ENST00000616154 C20orf78Q9BR46 151 aa12.4□□□□□ -0.42
CDX1-202ENST00000616154 POLR2KP53803 58 aaKnown RBP12.39□□□□□ -0.43
CDX1-202ENST00000616154 Q0VG73 95 aa12.39□□□□□ -0.43
CDX1-202ENST00000616154 MPV17L2Q567V2 206 aa12.39□□□□□ -0.43
CDX1-202ENST00000616154 UBE2WQ96B02 151 aa12.39□□□□□ -0.43
CDX1-202ENST00000616154 SUMO2P61956 95 aaKnown RBP12.38□□□□□ -0.43
CDX1-202ENST00000616154 TRBV27A0A0K0K1C4 114 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 ENHOQ6UWT2 76 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 CHAC1Q9BUX1 264 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 ST20Q9HBF5 79 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 TRBV25-1A0A075B6N4 114 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 SDHAF1A6NFY7 115 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 TMEM262E9PQX1 116 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 CHCHD5Q9BSY4 110 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 PRR34Q9NV39 138 aa12.37□□□□□ -0.43
CDX1-202ENST00000616154 LRP1Q07954 4544 aaKnown RBP12.36□□□□□ -0.43
CDX1-202ENST00000616154 IGHV1-24A0A0C4DH33 117 aa12.36□□□□□ -0.43
CDX1-202ENST00000616154 KRTAP10-4P60372 401 aaPredicted RBP12.35□□□□□ -0.43
CDX1-202ENST00000616154 C18orf32Q8TCD1 76 aa12.35□□□□□ -0.43
CDX1-202ENST00000616154 SMIM2Q9BVW6 85 aa12.35□□□□□ -0.43
CDX1-202ENST00000616154 RBX1P62877 108 aa12.34□□□□□ -0.43
CDX1-202ENST00000616154 CIRBP-AS1Q8TBR5 109 aa12.34□□□□□ -0.43
CDX1-202ENST00000616154 MAP1LC3AQ9H492 121 aa12.34□□□□□ -0.43
CDX1-202ENST00000616154 VCYO14598 125 aa12.33□□□□□ -0.44
CDX1-202ENST00000616154 ANGP03950 147 aaKnown RBP12.33□□□□□ -0.44
CDX1-202ENST00000616154 MIAQ16674 131 aa12.33□□□□□ -0.44
CDX1-202ENST00000616154 C14orf177Q52M58 125 aa12.33□□□□□ -0.44
CDX1-202ENST00000616154 C1orf43Q9BWL3 253 aa12.33□□□□□ -0.44
CDX1-202ENST00000616154 FAT3Q8TDW7 4589 aa12.32□□□□□ -0.44
CDX1-202ENST00000616154 A0A1B0GUV1 79 aa12.32□□□□□ -0.44
CDX1-202ENST00000616154 LINC01546A6NGU7 62 aa12.32□□□□□ -0.44
CDX1-202ENST00000616154 CRPP02741 224 aa12.32□□□□□ -0.44
CDX1-202ENST00000616154 I3L3M4 83 aa12.31□□□□□ -0.44
CDX1-202ENST00000616154 GAGE6Q13070 117 aa12.31□□□□□ -0.44
CDX1-202ENST00000616154 Q8N8P6 123 aa12.31□□□□□ -0.44
CDX1-202ENST00000616154 TMEM243Q9BU79 118 aa12.31□□□□□ -0.44
CDX1-202ENST00000616154 NXT2Q9NPJ8 142 aaKnown RBP12.31□□□□□ -0.44
CDX1-202ENST00000616154 PKHD1L1Q86WI1 4243 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 K7EMI3 77 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BKO60814 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 TSHBP01222 138 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BJP06899 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 PMCHP20382 165 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BOP23527 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BBP33778 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BDP58876 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BCP62807 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST2H2BEQ16778 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.3□□□□□ -0.44
CDX1-202ENST00000616154 KRTAP26-1Q6PEX3 210 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BHQ93079 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BNQ99877 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 HIST1H2BMQ99879 126 aa12.3□□□□□ -0.44
CDX1-202ENST00000616154 C1orf196B1AJZ1 125 aa12.29□□□□□ -0.44
CDX1-202ENST00000616154 C20orf203Q8NBC4 194 aa12.29□□□□□ -0.44
CDX1-202ENST00000616154 URB1-AS1Q96HZ7 61 aa12.29□□□□□ -0.44
CDX1-202ENST00000616154 LOC389332A0A1B0GUA5 103 aa12.28□□□□□ -0.44
CDX1-202ENST00000616154 TCAPO15273 167 aa12.28□□□□□ -0.44
CDX1-202ENST00000616154 IFI27P40305 119 aaPredicted RBP12.28□□□□□ -0.44
CDX1-202ENST00000616154 COTL1Q14019 142 aa12.28□□□□□ -0.44
CDX1-202ENST00000616154 LINC00269Q8N2A0 174 aa12.28□□□□□ -0.44
CDX1-202ENST00000616154 KIR2DL4Q99706 377 aa12.28□□□□□ -0.44
CDX1-202ENST00000616154 OXTP01178 125 aa12.26□□□□□ -0.45
CDX1-202ENST00000616154 ESDP10768 282 aa12.26□□□□□ -0.45
CDX1-202ENST00000616154 HMCN2Q8NDA2 5059 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 IGLV4-60A0A075B6I1 120 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 USP17L23D6RBM5 183 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 AMTP48728 403 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 LINC00310P59036 64 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 REG3AQ06141 175 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 COA6Q5JTJ3 125 aaKnown RBP12.25□□□□□ -0.45
CDX1-202ENST00000616154 SERTAD4-AS1Q5TG53 156 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 PRSS3P2Q8NHM4 247 aa12.25□□□□□ -0.45
CDX1-202ENST00000616154 TRAV8-4A0A0B4J246 113 aa12.24□□□□□ -0.45
CDX1-202ENST00000616154 LINC00614P0C842 121 aa12.24□□□□□ -0.45
CDX1-202ENST00000616154 RAB5BP61020 215 aa12.24□□□□□ -0.45
CDX1-202ENST00000616154 CHCHD1Q96BP2 118 aaKnown RBP12.23□□□□□ -0.45
CDX1-202ENST00000616154 H7C423 109 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 PRSS1P07477 247 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 FCER1GP30273 86 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 ORMDL2Q53FV1 153 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 DGAT2L7PQ6IED9 249 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 CLPSL2Q6UWE3 100 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 FA2HQ7L5A8 372 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 AP5S1Q9NUS5 200 aa12.22□□□□□ -0.45
CDX1-202ENST00000616154 RPL37AP61513 92 aaKnown RBP12.21□□□□□ -0.45
CDX1-202ENST00000616154 BAGE3Q86Y29 109 aa12.21□□□□□ -0.45
CDX1-202ENST00000616154 UBE2L6O14933 153 aa12.2□□□□□ -0.46
CDX1-202ENST00000616154 C9orf163Q8N9P6 203 aa12.2□□□□□ -0.46
CDX1-202ENST00000616154 SERF1AO75920 110 aa12.19□□□□□ -0.46
CDX1-202ENST00000616154 A0A096LNJ9 63 aa12.18□□□□□ -0.46
CDX1-202ENST00000616154 RNASEKQ6P5S7 137 aaKnown RBP12.18□□□□□ -0.46
CDX1-202ENST00000616154 NUPR1O60356 82 aa12.17□□□□□ -0.46
CDX1-202ENST00000616154 MRPL52Q86TS9 123 aaKnown RBP12.17□□□□□ -0.46
CDX1-202ENST00000616154 IGLV10-54A0A075B6I4 117 aa12.16□□□□□ -0.46
CDX1-202ENST00000616154 ZNF25P17030 456 aaPredicted RBP12.16□□□□□ -0.46
CDX1-202ENST00000616154 G0S2P27469 103 aa12.16□□□□□ -0.46
CDX1-202ENST00000616154 TIMM21Q9BVV7 248 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms