RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CSMD3Q7Z407 3707 aa9.83□□□□□ -0.84
USP39-220ENST00000613444 GAGE6Q13070 117 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 RNASE13Q5GAN3 156 aaKnown RBP9.82□□□□□ -0.84
USP39-220ENST00000613444 CHCHD5Q9BSY4 110 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 CHTOPQ9Y3Y2 248 aaKnown RBP9.82□□□□□ -0.84
USP39-220ENST00000613444 IGLV4-69A0A075B6H9 119 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 UBE2L6O14933 153 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 LYPD5Q6UWN5 251 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 ZNF664Q8N3J9 261 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 VCX2Q9H322 139 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 CDC42SE2Q9NRR3 84 aa9.82□□□□□ -0.84
USP39-220ENST00000613444 TRAV9-2A0A087WT02 112 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 TIRAPP58753 221 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 PAPPA-AS1Q5QFB9 102 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 hDV102S1A0JD36 115 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 DPM2O94777 84 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 S100A12P80511 92 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 LELP1Q5T871 98 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 VAMP8Q9BV40 100 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 PAM16Q9Y3D7 125 aa9.81□□□□□ -0.84
USP39-220ENST00000613444 IGLV4-60A0A075B6I1 120 aa9.8□□□□□ -0.84
USP39-220ENST00000613444 IGKCP01834 107 aa9.8□□□□□ -0.84
USP39-220ENST00000613444 ZNF25P17030 456 aaPredicted RBP9.8□□□□□ -0.84
USP39-220ENST00000613444 DGAT2L7PQ6IED9 249 aa9.8□□□□□ -0.84
USP39-220ENST00000613444 AMMECR1LQ6DCA0 310 aa9.8□□□□□ -0.84
USP39-220ENST00000613444 OR5A1Q8NGJ0 315 aa9.8□□□□□ -0.84
USP39-220ENST00000613444 PLNP26678 52 aa9.79□□□□□ -0.84
USP39-220ENST00000613444 SMAGPQ0VAQ4 97 aa9.79□□□□□ -0.84
USP39-220ENST00000613444 A0A1B0GUV1 79 aa9.78□□□□□ -0.84
USP39-220ENST00000613444 MPV17L2Q567V2 206 aa9.78□□□□□ -0.84
USP39-220ENST00000613444 C11orf86A6NJI1 115 aa9.78□□□□□ -0.84
USP39-220ENST00000613444 ESRGQ1W209 222 aa9.78□□□□□ -0.84
USP39-220ENST00000613444 STPG4Q8N801 248 aa9.78□□□□□ -0.84
USP39-220ENST00000613444 RBX1P62877 108 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 SPATA45Q537H7 98 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 NFE4Q86UQ8 179 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 Q8N3U1 123 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 C15orf53Q8NAA6 179 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 TMEM101Q96IK0 257 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 A0A0J9YXV3 536 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 IGLC3P0DOY3 106 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 UBE2D1P51668 147 aa9.77□□□□□ -0.85
USP39-220ENST00000613444 TMEM262E9PQX1 116 aa9.76□□□□□ -0.85
USP39-220ENST00000613444 ANKRD39Q53RE8 183 aa9.76□□□□□ -0.85
USP39-220ENST00000613444 C2orf88Q9BSF0 95 aa9.75□□□□□ -0.85
USP39-220ENST00000613444 PRO1933Q9H354 126 aa9.75□□□□□ -0.85
USP39-220ENST00000613444 PLECQ15149 4684 aaKnown RBP9.75□□□□□ -0.85
USP39-220ENST00000613444 IGLL5B9A064 214 aa9.75□□□□□ -0.85
USP39-220ENST00000613444 FAM19A3Q7Z5A8 133 aa9.75□□□□□ -0.85
USP39-220ENST00000613444 LYSTQ99698 3801 aa9.75□□□□□ -0.85
USP39-220ENST00000613444 STARD9Q9P2P6 4700 aa9.75□□□□□ -0.85
USP39-220ENST00000613444 CHAC1Q9BUX1 264 aa9.74□□□□□ -0.85
USP39-220ENST00000613444 PKIAP61925 76 aa9.74□□□□□ -0.85
USP39-220ENST00000613444 TINCRA0A1B0GVN0 87 aa9.73□□□□□ -0.85
USP39-220ENST00000613444 HSBP1L1C9JCN9 74 aa9.73□□□□□ -0.85
USP39-220ENST00000613444 LINC00242Q5T6M2 205 aa9.73□□□□□ -0.85
USP39-220ENST00000613444 WFDC10BQ8IUB3 73 aa9.73□□□□□ -0.85
USP39-220ENST00000613444 ZNF22P17026 224 aaPredicted RBP9.73□□□□□ -0.85
USP39-220ENST00000613444 IGKV2D-26A0A0A0MRZ7 120 aa9.72□□□□□ -0.85
USP39-220ENST00000613444 TRAV13-1A0A0B4J241 112 aa9.72□□□□□ -0.85
USP39-220ENST00000613444 TRAV8-6A0A0B4J262 113 aa9.72□□□□□ -0.85
USP39-220ENST00000613444 TCTAP57738 103 aa9.72□□□□□ -0.85
USP39-220ENST00000613444 COX6A2Q02221 97 aa9.72□□□□□ -0.85
USP39-220ENST00000613444 TGP01266 2768 aa9.72□□□□□ -0.85
USP39-220ENST00000613444 IGLV5-45A0A087WSX0 123 aa9.71□□□□□ -0.86
USP39-220ENST00000613444 TMEM170BQ5T4T1 132 aa9.7□□□□□ -0.86
USP39-220ENST00000613444 C14orf144Q96I85 54 aa9.7□□□□□ -0.86
USP39-220ENST00000613444 LINC00588Q9Y4M8 146 aa9.7□□□□□ -0.86
USP39-220ENST00000613444 TSTD3H0UI37 97 aa9.7□□□□□ -0.86
USP39-220ENST00000613444 LINC00269Q8N2A0 174 aa9.7□□□□□ -0.86
USP39-220ENST00000613444 APLNQ9ULZ1 77 aa9.7□□□□□ -0.86
USP39-220ENST00000613444 TENM2Q9NT68 2774 aa9.69□□□□□ -0.86
USP39-220ENST00000613444 LINC00959A0A1B0GUT2 108 aa9.69□□□□□ -0.86
USP39-220ENST00000613444 TMEM223A0PJW6 202 aa9.69□□□□□ -0.86
USP39-220ENST00000613444 TP73-AS1Q9UF72 201 aa9.69□□□□□ -0.86
USP39-220ENST00000613444 IGKV3OR2-268A0A0C4DH90 116 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 E9PLD3 99 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 ANGP03950 147 aaKnown RBP9.68□□□□□ -0.86
USP39-220ENST00000613444 CDKN2A-AS1Q9UH64 79 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 PCP4L1A6NKN8 68 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 HERVK_113P63121 156 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 SEC11AP67812 179 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 CLPSL2Q6UWE3 100 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 GEMIN7Q9H840 131 aaKnown RBP9.68□□□□□ -0.86
USP39-220ENST00000613444 PRR34Q9NV39 138 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 MRPS16Q9Y3D3 137 aaKnown RBP9.68□□□□□ -0.86
USP39-220ENST00000613444 DNAH1Q9P2D7 4330 aa9.68□□□□□ -0.86
USP39-220ENST00000613444 IGHV3-30P01768 117 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 IGHV3-33P01772 117 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 IGHV3-30-3P0DP02 117 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 IGHV3-30-5P0DP03 117 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 COX8AP10176 69 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 PCP2Q8IVA1 136 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 NUPR2A6NF83 97 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 NMUP48645 174 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 REG3AQ06141 175 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 LINC01556Q5JQF7 62 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 LINC00469Q8N7U9 141 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 SVIPQ8NHG7 77 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 MIEN1Q9BRT3 115 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 207.1 ms