RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FGF6P10767 208 aa11.02□□□□□ -0.65
CCDC28A-202ENST00000611852 PDZD11Q5EBL8 140 aa11.02□□□□□ -0.65
CCDC28A-202ENST00000611852 AMMECR1LQ6DCA0 310 aa11.02□□□□□ -0.65
CCDC28A-202ENST00000611852 RMI2Q96E14 147 aa11.02□□□□□ -0.65
CCDC28A-202ENST00000611852 PRSS47A8MTI9 375 aa11.01□□□□□ -0.65
CCDC28A-202ENST00000611852 AKR1D1P51857 326 aa11.01□□□□□ -0.65
CCDC28A-202ENST00000611852 MIAQ16674 131 aa11.01□□□□□ -0.65
CCDC28A-202ENST00000611852 CLPSL2Q6UWE3 100 aa11.01□□□□□ -0.65
CCDC28A-202ENST00000611852 COX11Q9Y6N1 276 aa11.01□□□□□ -0.65
CCDC28A-202ENST00000611852 IGKV2D-24A0A075B6R9 120 aa11□□□□□ -0.65
CCDC28A-202ENST00000611852 A0A087WTM6 91 aa11□□□□□ -0.65
CCDC28A-202ENST00000611852 SERF1AO75920 110 aa11□□□□□ -0.65
CCDC28A-202ENST00000611852 REG3AQ06141 175 aa11□□□□□ -0.65
CCDC28A-202ENST00000611852 RNASEKQ6P5S7 137 aaKnown RBP11□□□□□ -0.65
CCDC28A-202ENST00000611852 PKD1P98161 4303 aa11□□□□□ -0.65
CCDC28A-202ENST00000611852 LRCOL1A6NCL2 159 aa10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 TCAPO15273 167 aa10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 ZNF25P17030 456 aaPredicted RBP10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 MAPKAPK5-AS1Q8N8E1 139 aa10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 C1orf43Q9BWL3 253 aa10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 MRPL52Q86TS9 123 aaKnown RBP10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 TMEM18Q96B42 140 aa10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 MAP1LC3AQ9H492 121 aa10.99□□□□□ -0.65
CCDC28A-202ENST00000611852 LOC389332A0A1B0GUA5 103 aa10.98□□□□□ -0.65
CCDC28A-202ENST00000611852 IFITM10A6NMD0 228 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 EREGO14944 169 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 FABP4P15090 132 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 LINC00310P59036 64 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 SPATA12Q7Z6I5 190 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 TMEM101Q96IK0 257 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 HIST1H2BLQ99880 126 aa10.97□□□□□ -0.65
CCDC28A-202ENST00000611852 KRTAP10-2P60368 255 aa10.96□□□□□ -0.65
CCDC28A-202ENST00000611852 Q8N8P6 123 aa10.96□□□□□ -0.65
CCDC28A-202ENST00000611852 OR5A1Q8NGJ0 315 aa10.96□□□□□ -0.65
CCDC28A-202ENST00000611852 HSBP1O75506 76 aa10.95□□□□□ -0.66
CCDC28A-202ENST00000611852 WFDC2Q14508 124 aa10.95□□□□□ -0.66
CCDC28A-202ENST00000611852 CHCHD1Q96BP2 118 aaKnown RBP10.95□□□□□ -0.66
CCDC28A-202ENST00000611852 PACRGQ96M98 296 aaPredicted RBP10.95□□□□□ -0.66
CCDC28A-202ENST00000611852 UBE2D4Q9Y2X8 147 aa10.95□□□□□ -0.66
CCDC28A-202ENST00000611852 IGLV10-54A0A075B6I4 117 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 TRAV8-4A0A0B4J246 113 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 NUPR1O60356 82 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 KRTAP26-1Q6PEX3 210 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 BAALCQ8WXS3 180 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 CDC42SE2Q9NRR3 84 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 CSDC2Q9Y534 153 aaKnown RBP10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 IGKV3OR2-268A0A0C4DH90 116 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 RPL39P62891 51 aaKnown RBP10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 SMAGPQ0VAQ4 97 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 FA2HQ7L5A8 372 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 ZNF664Q8N3J9 261 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 PRSS3P2Q8NHM4 247 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 NXT2Q9NPJ8 142 aaKnown RBP10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 DNAH11Q96DT5 4516 aa10.94□□□□□ -0.66
CCDC28A-202ENST00000611852 PKHD1P08F94 4074 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 BIRC6Q9NR09 4857 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 LECT2O14960 151 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 LINC00614P0C842 121 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 IFI27P40305 119 aaPredicted RBP10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 DGAT2L7PQ6IED9 249 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 OR10D4PQ8NGN7 298 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 TIMM21Q9BVV7 248 aa10.93□□□□□ -0.66
CCDC28A-202ENST00000611852 Q8N814 137 aa10.92□□□□□ -0.66
CCDC28A-202ENST00000611852 AP5S1Q9NUS5 200 aa10.92□□□□□ -0.66
CCDC28A-202ENST00000611852 K7EMI3 77 aa10.91□□□□□ -0.66
CCDC28A-202ENST00000611852 FUSP35637 526 aaKnown RBP eCLIP10.91□□□□□ -0.66
CCDC28A-202ENST00000611852 PGPEP1Q9NXJ5 209 aa10.91□□□□□ -0.66
CCDC28A-202ENST00000611852 C16orf90A8MZG2 172 aa10.9□□□□□ -0.66
CCDC28A-202ENST00000611852 URB1-AS1Q96HZ7 61 aa10.9□□□□□ -0.66
CCDC28A-202ENST00000611852 SPANXA1Q9NS26 97 aa10.9□□□□□ -0.66
CCDC28A-202ENST00000611852 SMIM6P0DI80 62 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 ORMDL2Q53FV1 153 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 CDPF1Q6NVV7 123 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 Q6ZUT4 128 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 LINC00959A0A1B0GUT2 108 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 RNASE13Q5GAN3 156 aaKnown RBP10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 FAM19A2Q8N3H0 131 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 CHCHD10Q8WYQ3 142 aaPredicted RBP10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 FAM104AQ969W3 186 aa10.89□□□□□ -0.67
CCDC28A-202ENST00000611852 NTN5Q8WTR8 489 aaPredicted RBP10.88□□□□□ -0.67
CCDC28A-202ENST00000611852 GAGE12HA6NDE8 117 aa10.87□□□□□ -0.67
CCDC28A-202ENST00000611852 USP17L23D6RBM5 183 aa10.87□□□□□ -0.67
CCDC28A-202ENST00000611852 C2orf66Q6UXQ4 117 aa10.87□□□□□ -0.67
CCDC28A-202ENST00000611852 OPRPNQ99935 248 aaPredicted RBP10.87□□□□□ -0.67
CCDC28A-202ENST00000611852 CYSLTR1Q9Y271 337 aa10.87□□□□□ -0.67
CCDC28A-202ENST00000611852 PYGO1Q9Y3Y4 419 aa10.87□□□□□ -0.67
CCDC28A-202ENST00000611852 LINC01546A6NGU7 62 aa10.86□□□□□ -0.67
CCDC28A-202ENST00000611852 MRPS36P82909 103 aaKnown RBP10.86□□□□□ -0.67
CCDC28A-202ENST00000611852 SS18Q15532 418 aa10.85□□□□□ -0.67
CCDC28A-202ENST00000611852 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 IGLV5-52A0A0A0MRZ9 124 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 CCL25O15444 150 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 XCL1P47992 114 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 PMCHL1Q16048 86 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 C14orf177Q52M58 125 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 IGLV4-3A0A075B6K6 122 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 TRAV13-1A0A0B4J241 112 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 G0S2P27469 103 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 FOXI1Q12951 378 aa10.84□□□□□ -0.67
CCDC28A-202ENST00000611852 LEPROTL1O95214 131 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms