RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 AP5S1Q9NUS5 200 aa12.73□□□□□ -0.37
UPF1-212ENST00000601689 KIAA1109Q2LD37 5005 aa12.73□□□□□ -0.37
UPF1-212ENST00000601689 DNAH5Q8TE73 4624 aa12.73□□□□□ -0.37
UPF1-212ENST00000601689 NPYP01303 97 aa12.72□□□□□ -0.37
UPF1-212ENST00000601689 KRTAP10-1P60331 282 aa12.72□□□□□ -0.37
UPF1-212ENST00000601689 SS18Q15532 418 aa12.72□□□□□ -0.37
UPF1-212ENST00000601689 MAP1LC3AQ9H492 121 aa12.72□□□□□ -0.37
UPF1-212ENST00000601689 RHEBQ15382 184 aa12.71□□□□□ -0.37
UPF1-212ENST00000601689 ZNF664Q8N3J9 261 aa12.71□□□□□ -0.37
UPF1-212ENST00000601689 CSDC2Q9Y534 153 aaKnown RBP12.71□□□□□ -0.37
UPF1-212ENST00000601689 GAGE12HA6NDE8 117 aa12.7□□□□□ -0.38
UPF1-212ENST00000601689 COX19Q49B96 90 aa12.7□□□□□ -0.38
UPF1-212ENST00000601689 CHCHD10Q8WYQ3 142 aaPredicted RBP12.7□□□□□ -0.38
UPF1-212ENST00000601689 CDC42SE2Q9NRR3 84 aa12.7□□□□□ -0.38
UPF1-212ENST00000601689 CCL25O15444 150 aa12.69□□□□□ -0.38
UPF1-212ENST00000601689 RPS10P5Q9NQ39 176 aa12.69□□□□□ -0.38
UPF1-212ENST00000601689 CARHSP1Q9Y2V2 147 aaKnown RBP12.69□□□□□ -0.38
UPF1-212ENST00000601689 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.68□□□□□ -0.38
UPF1-212ENST00000601689 hDV102S1A0JD36 115 aa12.68□□□□□ -0.38
UPF1-212ENST00000601689 C10orf91Q5T1B1 145 aa12.68□□□□□ -0.38
UPF1-212ENST00000601689 KRTAP26-1Q6PEX3 210 aa12.68□□□□□ -0.38
UPF1-212ENST00000601689 TIMM21Q9BVV7 248 aa12.68□□□□□ -0.38
UPF1-212ENST00000601689 UBE2D4Q9Y2X8 147 aa12.67□□□□□ -0.38
UPF1-212ENST00000601689 LOC389332A0A1B0GUA5 103 aa12.66□□□□□ -0.38
UPF1-212ENST00000601689 LINC00959A0A1B0GUT2 108 aa12.66□□□□□ -0.38
UPF1-212ENST00000601689 HERC2O95714 4834 aa12.66□□□□□ -0.38
UPF1-212ENST00000601689 PRSS47A8MTI9 375 aa12.65□□□□□ -0.38
UPF1-212ENST00000601689 C1orf196B1AJZ1 125 aa12.65□□□□□ -0.38
UPF1-212ENST00000601689 PRSS1P07477 247 aa12.65□□□□□ -0.38
UPF1-212ENST00000601689 G0S2P27469 103 aa12.65□□□□□ -0.38
UPF1-212ENST00000601689 XCL1P47992 114 aa12.65□□□□□ -0.38
UPF1-212ENST00000601689 SPANXA1Q9NS26 97 aa12.65□□□□□ -0.38
UPF1-212ENST00000601689 RYR1P21817 5038 aa12.64□□□□□ -0.39
UPF1-212ENST00000601689 K7EMI3 77 aa12.64□□□□□ -0.39
UPF1-212ENST00000601689 SNAPINO95295 136 aa12.64□□□□□ -0.39
UPF1-212ENST00000601689 IFI27P40305 119 aaPredicted RBP12.64□□□□□ -0.39
UPF1-212ENST00000601689 Q8N1X5 172 aa12.64□□□□□ -0.39
UPF1-212ENST00000601689 SVBPQ8N300 66 aa12.64□□□□□ -0.39
UPF1-212ENST00000601689 APOC3P02656 99 aa12.63□□□□□ -0.39
UPF1-212ENST00000601689 Q8N8P6 123 aa12.63□□□□□ -0.39
UPF1-212ENST00000601689 GNB1LQ9BYB4 327 aa12.63□□□□□ -0.39
UPF1-212ENST00000601689 NXT2Q9NPJ8 142 aaKnown RBP12.63□□□□□ -0.39
UPF1-212ENST00000601689 MT-ND6P03923 174 aa12.62□□□□□ -0.39
UPF1-212ENST00000601689 XGP55808 180 aa12.62□□□□□ -0.39
UPF1-212ENST00000601689 ORMDL2Q53FV1 153 aa12.62□□□□□ -0.39
UPF1-212ENST00000601689 CD164L2Q6UWJ8 174 aa12.62□□□□□ -0.39
UPF1-212ENST00000601689 TRAV13-1A0A0B4J241 112 aa12.6□□□□□ -0.39
UPF1-212ENST00000601689 IGHV1-58A0A0C4DH39 117 aa12.6□□□□□ -0.39
UPF1-212ENST00000601689 EPM2AB3EWF7 344 aa12.6□□□□□ -0.39
UPF1-212ENST00000601689 MALP21145 153 aa12.6□□□□□ -0.39
UPF1-212ENST00000601689 RPL39P62891 51 aaKnown RBP12.6□□□□□ -0.39
UPF1-212ENST00000601689 C9orf163Q8N9P6 203 aa12.6□□□□□ -0.39
UPF1-212ENST00000601689 APOBP04114 4563 aaKnown RBP12.59□□□□□ -0.39
UPF1-212ENST00000601689 FAM229AH3BQW9 127 aa12.59□□□□□ -0.39
UPF1-212ENST00000601689 CNBPP62633 177 aaKnown RBP12.59□□□□□ -0.39
UPF1-212ENST00000601689 MRPS36P82909 103 aaKnown RBP12.59□□□□□ -0.39
UPF1-212ENST00000601689 FOXI1Q12951 378 aa12.59□□□□□ -0.39
UPF1-212ENST00000601689 LINC01620Q4KN68 170 aa12.59□□□□□ -0.39
UPF1-212ENST00000601689 CYSLTR1Q9Y271 337 aa12.59□□□□□ -0.39
UPF1-212ENST00000601689 HSPG2P98160 4391 aa12.59□□□□□ -0.39
UPF1-212ENST00000601689 KIAA1644Q3SXP7 199 aa12.58□□□□□ -0.4
UPF1-212ENST00000601689 Q6ZN92 141 aa12.58□□□□□ -0.4
UPF1-212ENST00000601689 Q6ZUT4 128 aa12.58□□□□□ -0.4
UPF1-212ENST00000601689 PRSS3P2Q8NHM4 247 aa12.58□□□□□ -0.4
UPF1-212ENST00000601689 IGHV3-64A0A075B6Q5 118 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 ZNF561-AS1K7EIQ3 104 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 COX7A2LO14548 114 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 APOMO95445 188 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 RNASE13Q5GAN3 156 aaKnown RBP12.57□□□□□ -0.4
UPF1-212ENST00000601689 Q6ZSA8 131 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 PKIGQ9Y2B9 76 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 PYGO1Q9Y3Y4 419 aa12.57□□□□□ -0.4
UPF1-212ENST00000601689 FABP9Q0Z7S8 132 aa12.56□□□□□ -0.4
UPF1-212ENST00000601689 HIGD2BQ4VC39 106 aa12.56□□□□□ -0.4
UPF1-212ENST00000601689 C15orf56Q8N910 161 aa12.56□□□□□ -0.4
UPF1-212ENST00000601689 FAM30AQ9NZY2 134 aa12.56□□□□□ -0.4
UPF1-212ENST00000601689 IFITM10A6NMD0 228 aa12.55□□□□□ -0.4
UPF1-212ENST00000601689 PAPPA-AS1Q5QFB9 102 aa12.55□□□□□ -0.4
UPF1-212ENST00000601689 C2orf66Q6UXQ4 117 aa12.55□□□□□ -0.4
UPF1-212ENST00000601689 TMEM141Q96I45 108 aa12.55□□□□□ -0.4
UPF1-212ENST00000601689 C2orf88Q9BSF0 95 aa12.55□□□□□ -0.4
UPF1-212ENST00000601689 MRPL18Q9H0U6 180 aaKnown RBP12.55□□□□□ -0.4
UPF1-212ENST00000601689 GVQW2A0A096LPI5 108 aaPredicted RBP12.54□□□□□ -0.4
UPF1-212ENST00000601689 LINC01549A6NIU2 74 aa12.54□□□□□ -0.4
UPF1-212ENST00000601689 TEX43Q6ZNM6 134 aa12.54□□□□□ -0.4
UPF1-212ENST00000601689 CHAC1Q9BUX1 264 aa12.54□□□□□ -0.4
UPF1-212ENST00000601689 SMR3BP02814 79 aaPredicted RBP12.53□□□□□ -0.4
UPF1-212ENST00000601689 HAMPP81172 84 aa12.53□□□□□ -0.4
UPF1-212ENST00000601689 DPH3Q96FX2 82 aa12.53□□□□□ -0.4
UPF1-212ENST00000601689 SMCO4Q9NRQ5 59 aa12.53□□□□□ -0.4
UPF1-212ENST00000601689 NPSP0C0P6 89 aa12.52□□□□□ -0.41
UPF1-212ENST00000601689 VCX2Q9H322 139 aa12.52□□□□□ -0.41
UPF1-212ENST00000601689 TRAPPC1Q9Y5R8 145 aa12.52□□□□□ -0.41
UPF1-212ENST00000601689 TGIF2-C20orf24A0A0A6YYL0 155 aa12.51□□□□□ -0.41
UPF1-212ENST00000601689 Q5VSD8 79 aa12.51□□□□□ -0.41
UPF1-212ENST00000601689 FA2HQ7L5A8 372 aa12.5□□□□□ -0.41
UPF1-212ENST00000601689 SCXQ7RTU7 201 aa12.5□□□□□ -0.41
UPF1-212ENST00000601689 OPRPNQ99935 248 aaPredicted RBP12.5□□□□□ -0.41
UPF1-212ENST00000601689 ALKBH7Q9BT30 221 aaPredicted RBP12.5□□□□□ -0.41
UPF1-212ENST00000601689 IGLV4-3A0A075B6K6 122 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms