RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 LST1O00453 97 aa13.36□□□□□ -0.27
UPF1-210ENST00000600689 Q9H8V8 135 aa13.36□□□□□ -0.27
UPF1-210ENST00000600689 TEX15Q9BXT5 2789 aa13.35□□□□□ -0.27
UPF1-210ENST00000600689 IGLV1-40P01703 118 aa13.35□□□□□ -0.27
UPF1-210ENST00000600689 K7EQG2 157 aa13.35□□□□□ -0.27
UPF1-210ENST00000600689 TRAV13-1A0A0B4J241 112 aa13.34□□□□□ -0.27
UPF1-210ENST00000600689 COX6A2Q02221 97 aa13.34□□□□□ -0.27
UPF1-210ENST00000600689 TLN2Q9Y4G6 2542 aa13.34□□□□□ -0.27
UPF1-210ENST00000600689 Q8N2B8 174 aa13.34□□□□□ -0.27
UPF1-210ENST00000600689 H3BT86 120 aa13.33□□□□□ -0.28
UPF1-210ENST00000600689 HOXD3P31249 432 aaPredicted RBP13.33□□□□□ -0.28
UPF1-210ENST00000600689 M0QXV9 152 aa13.33□□□□□ -0.28
UPF1-210ENST00000600689 CFHR3Q02985 330 aa13.33□□□□□ -0.28
UPF1-210ENST00000600689 UBE2D4Q9Y2X8 147 aa13.33□□□□□ -0.28
UPF1-210ENST00000600689 DEFB112Q30KQ8 113 aa13.32□□□□□ -0.28
UPF1-210ENST00000600689 CITED2Q99967 270 aaPredicted RBP13.32□□□□□ -0.28
UPF1-210ENST00000600689 CHCHD7Q9BUK0 85 aa13.32□□□□□ -0.28
UPF1-210ENST00000600689 IGHV3-53P01767 116 aa13.32□□□□□ -0.28
UPF1-210ENST00000600689 TMEM101Q96IK0 257 aa13.32□□□□□ -0.28
UPF1-210ENST00000600689 SPANXDQ9BXN6 97 aa13.32□□□□□ -0.28
UPF1-210ENST00000600689 SPANXCQ9NY87 97 aa13.32□□□□□ -0.28
UPF1-210ENST00000600689 H3BUA1 57 aa13.31□□□□□ -0.28
UPF1-210ENST00000600689 K7EMT4 169 aa13.31□□□□□ -0.28
UPF1-210ENST00000600689 KRTAP10-9P60411 292 aa13.31□□□□□ -0.28
UPF1-210ENST00000600689 IGKV3OR2-268A0A0C4DH90 116 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 KHDC1LQ5JSQ8 128 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 C18orf65Q6ZTR6 163 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 LINC01587Q99440 93 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 NAV2Q8IVL1 2488 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 TINCRA0A1B0GVN0 87 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 Q9HAA7 133 aa13.3□□□□□ -0.28
UPF1-210ENST00000600689 Q6Q795 121 aa13.29□□□□□ -0.28
UPF1-210ENST00000600689 YAE1D1Q9NRH1 226 aa13.29□□□□□ -0.28
UPF1-210ENST00000600689 PYGO1Q9Y3Y4 419 aa13.29□□□□□ -0.28
UPF1-210ENST00000600689 JMJD1CQ15652 2540 aa13.29□□□□□ -0.28
UPF1-210ENST00000600689 PIK3CD-AS1Q5SR53 167 aa13.28□□□□□ -0.28
UPF1-210ENST00000600689 PSMB8P28062 276 aa13.28□□□□□ -0.28
UPF1-210ENST00000600689 CIRBPQ14011 172 aaKnown RBP13.28□□□□□ -0.28
UPF1-210ENST00000600689 LINC00308Q8TCZ7 52 aa13.28□□□□□ -0.28
UPF1-210ENST00000600689 A0A096LNT2 108 aa13.28□□□□□ -0.28
UPF1-210ENST00000600689 SLURP1P55000 103 aa13.28□□□□□ -0.28
UPF1-210ENST00000600689 SMCR5Q8TEV8 140 aa13.28□□□□□ -0.28
UPF1-210ENST00000600689 DAZ2Q13117 558 aaKnown RBP13.27□□□□□ -0.29
UPF1-210ENST00000600689 SOSTDC1Q6X4U4 206 aa13.27□□□□□ -0.29
UPF1-210ENST00000600689 DAZ4Q86SG3 579 aaKnown RBP13.27□□□□□ -0.29
UPF1-210ENST00000600689 PRIMA1Q86XR5 153 aa13.27□□□□□ -0.29
UPF1-210ENST00000600689 LINC01356Q8N9X3 169 aa13.27□□□□□ -0.29
UPF1-210ENST00000600689 DAZ3Q9NR90 486 aaKnown RBP13.27□□□□□ -0.29
UPF1-210ENST00000600689 APCP25054 2843 aa13.26□□□□□ -0.29
UPF1-210ENST00000600689 RBMY1BA6NDE4 496 aaKnown RBP13.26□□□□□ -0.29
UPF1-210ENST00000600689 RBMY1EA6NEQ0 496 aaKnown RBP13.26□□□□□ -0.29
UPF1-210ENST00000600689 RBMY1DP0C7P1 496 aaKnown RBP13.26□□□□□ -0.29
UPF1-210ENST00000600689 LINC00694P0DN24 101 aa13.26□□□□□ -0.29
UPF1-210ENST00000600689 ZNF843Q8N446 348 aa13.26□□□□□ -0.29
UPF1-210ENST00000600689 UBE2E2Q96LR5 201 aa13.26□□□□□ -0.29
UPF1-210ENST00000600689 SONP18583 2426 aaKnown RBP13.25□□□□□ -0.29
UPF1-210ENST00000600689 GAGE2AQ6NT46 116 aa13.25□□□□□ -0.29
UPF1-210ENST00000600689 BAALC-AS2P0C853 105 aa13.24□□□□□ -0.29
UPF1-210ENST00000600689 XCL2Q9UBD3 114 aa13.24□□□□□ -0.29
UPF1-210ENST00000600689 KLK5Q9Y337 293 aaPredicted RBP13.24□□□□□ -0.29
UPF1-210ENST00000600689 DSCR9P59020 149 aa13.24□□□□□ -0.29
UPF1-210ENST00000600689 SPANXA1Q9NS26 97 aa13.24□□□□□ -0.29
UPF1-210ENST00000600689 TOMM7Q9P0U1 55 aa13.24□□□□□ -0.29
UPF1-210ENST00000600689 FAM218AQ96MZ4 157 aa13.23□□□□□ -0.29
UPF1-210ENST00000600689 BRI3O95415 125 aa13.22□□□□□ -0.29
UPF1-210ENST00000600689 C9orf153Q5TBE3 101 aa13.22□□□□□ -0.29
UPF1-210ENST00000600689 NDUFA1O15239 70 aa13.21□□□□□ -0.29
UPF1-210ENST00000600689 AKAP9Q99996 3911 aa13.21□□□□□ -0.29
UPF1-210ENST00000600689 CR1P17927 2039 aa13.21□□□□□ -0.3
UPF1-210ENST00000600689 COX7A2LO14548 114 aa13.21□□□□□ -0.3
UPF1-210ENST00000600689 ZNF415Q09FC8 603 aa13.21□□□□□ -0.3
UPF1-210ENST00000600689 LINC00242Q5T6M2 205 aa13.21□□□□□ -0.3
UPF1-210ENST00000600689 PPDPFQ9H3Y8 114 aa13.2□□□□□ -0.3
UPF1-210ENST00000600689 TRGV1A0A0A0MS02 117 aa13.2□□□□□ -0.3
UPF1-210ENST00000600689 FAM110AQ9BQ89 295 aa13.2□□□□□ -0.3
UPF1-210ENST00000600689 TENM4Q6N022 2769 aa13.19□□□□□ -0.3
UPF1-210ENST00000600689 NF1P21359 2839 aa13.18□□□□□ -0.3
UPF1-210ENST00000600689 MRPL23Q16540 153 aaKnown RBP13.18□□□□□ -0.3
UPF1-210ENST00000600689 C11orf44Q8N8P7 122 aa13.18□□□□□ -0.3
UPF1-210ENST00000600689 CFAP161Q6P656 301 aa13.18□□□□□ -0.3
UPF1-210ENST00000600689 IGHV4-31P0DP07 118 aa13.17□□□□□ -0.3
UPF1-210ENST00000600689 CHD6Q8TD26 2715 aa13.17□□□□□ -0.3
UPF1-210ENST00000600689 FAM240AA0A1B0GVK7 77 aa13.17□□□□□ -0.3
UPF1-210ENST00000600689 TIRAPP58753 221 aa13.17□□□□□ -0.3
UPF1-210ENST00000600689 TRBV7-7A0A0K0K1E9 115 aa13.16□□□□□ -0.3
UPF1-210ENST00000600689 LOC107984640A0A0U1RRK4 108 aa13.16□□□□□ -0.3
UPF1-210ENST00000600689 SMIM1B2RUZ4 78 aa13.16□□□□□ -0.3
UPF1-210ENST00000600689 ATP5G1P05496 136 aa13.15□□□□□ -0.3
UPF1-210ENST00000600689 C11orf68Q9H3H3 251 aaKnown RBP13.15□□□□□ -0.3
UPF1-210ENST00000600689 CCDC168Q8NDH2 2452 aa13.15□□□□□ -0.3
UPF1-210ENST00000600689 IGKV3D-7A0A0C4DH55 119 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 SDIM1Q6ZPB5 146 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 LINC01600Q96MT4 127 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 EDA2RQ9HAV5 297 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 VPREB3Q9UKI3 123 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 ITPR3Q14573 2671 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 HERVK_113P63121 156 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 DEFB121Q5J5C9 76 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 DYNLRB2Q8TF09 96 aa13.14□□□□□ -0.31
UPF1-210ENST00000600689 FN1P02751 2386 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms