RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 LAMTOR2Q9Y2Q5 125 aa10.01□□□□□ -0.81
LIG1-219ENST00000600055 PHOX2AO14813 284 aa10□□□□□ -0.81
LIG1-219ENST00000600055 NTN5Q8WTR8 489 aaPredicted RBP10□□□□□ -0.81
LIG1-219ENST00000600055 PRELID3AQ96N28 172 aa10□□□□□ -0.81
LIG1-219ENST00000600055 KIR2DL4Q99706 377 aa10□□□□□ -0.81
LIG1-219ENST00000600055 SMIM2Q9BVW6 85 aa10□□□□□ -0.81
LIG1-219ENST00000600055 TRAPPC1Q9Y5R8 145 aa10□□□□□ -0.81
LIG1-219ENST00000600055 RYR1P21817 5038 aa9.99□□□□□ -0.81
LIG1-219ENST00000600055 GCSHP23434 173 aa9.99□□□□□ -0.81
LIG1-219ENST00000600055 RPL32P62910 135 aaKnown RBP9.99□□□□□ -0.81
LIG1-219ENST00000600055 FABP9Q0Z7S8 132 aa9.99□□□□□ -0.81
LIG1-219ENST00000600055 TRAV8-4A0A0B4J246 113 aa9.98□□□□□ -0.81
LIG1-219ENST00000600055 ZNF25P17030 456 aaPredicted RBP9.98□□□□□ -0.81
LIG1-219ENST00000600055 YPEL4Q96NS1 127 aa9.98□□□□□ -0.81
LIG1-219ENST00000600055 MRPL18Q9H0U6 180 aaKnown RBP9.98□□□□□ -0.81
LIG1-219ENST00000600055 USP17L23D6RBM5 183 aa9.97□□□□□ -0.81
LIG1-219ENST00000600055 TCAPO15273 167 aa9.97□□□□□ -0.81
LIG1-219ENST00000600055 CDK2AP2O75956 126 aa9.97□□□□□ -0.81
LIG1-219ENST00000600055 MRPL52Q86TS9 123 aaKnown RBP9.97□□□□□ -0.81
LIG1-219ENST00000600055 OR5A1Q8NGJ0 315 aa9.97□□□□□ -0.81
LIG1-219ENST00000600055 TMEM101Q96IK0 257 aa9.97□□□□□ -0.81
LIG1-219ENST00000600055 LOC389332A0A1B0GUA5 103 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 GAGE12HA6NDE8 117 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 RAB5AP20339 215 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 KIAA1644Q3SXP7 199 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 KRTAP17-1Q9BYP8 105 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 CDC42SE2Q9NRR3 84 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 UBE2D4Q9Y2X8 147 aa9.95□□□□□ -0.82
LIG1-219ENST00000600055 APOBP04114 4563 aaKnown RBP9.95□□□□□ -0.82
LIG1-219ENST00000600055 COLCA2A8K830 154 aa9.94□□□□□ -0.82
LIG1-219ENST00000600055 SCO1O75880 301 aa9.94□□□□□ -0.82
LIG1-219ENST00000600055 PRSS1P07477 247 aa9.94□□□□□ -0.82
LIG1-219ENST00000600055 RPL39P62891 51 aaKnown RBP9.94□□□□□ -0.82
LIG1-219ENST00000600055 LINC01620Q4KN68 170 aa9.94□□□□□ -0.82
LIG1-219ENST00000600055 ZNF664Q8N3J9 261 aa9.94□□□□□ -0.82
LIG1-219ENST00000600055 CHCHD10Q8WYQ3 142 aaPredicted RBP9.94□□□□□ -0.82
LIG1-219ENST00000600055 MAP1LC3AQ9H492 121 aa9.94□□□□□ -0.82
LIG1-219ENST00000600055 HSPG2P98160 4391 aa9.93□□□□□ -0.82
LIG1-219ENST00000600055 PRSS47A8MTI9 375 aa9.93□□□□□ -0.82
LIG1-219ENST00000600055 C14orf177Q52M58 125 aa9.93□□□□□ -0.82
LIG1-219ENST00000600055 RNASE13Q5GAN3 156 aaKnown RBP9.93□□□□□ -0.82
LIG1-219ENST00000600055 DGAT2L7PQ6IED9 249 aa9.93□□□□□ -0.82
LIG1-219ENST00000600055 LINC00959A0A1B0GUT2 108 aa9.92□□□□□ -0.82
LIG1-219ENST00000600055 XGP55808 180 aa9.92□□□□□ -0.82
LIG1-219ENST00000600055 TMEM18Q96B42 140 aa9.92□□□□□ -0.82
LIG1-219ENST00000600055 HAMPP81172 84 aa9.91□□□□□ -0.82
LIG1-219ENST00000600055 Q6ZUT4 128 aa9.91□□□□□ -0.82
LIG1-219ENST00000600055 NXT2Q9NPJ8 142 aaKnown RBP9.91□□□□□ -0.82
LIG1-219ENST00000600055 FAM30AQ9NZY2 134 aa9.91□□□□□ -0.82
LIG1-219ENST00000600055 CSDC2Q9Y534 153 aaKnown RBP9.91□□□□□ -0.82
LIG1-219ENST00000600055 K7EMI3 77 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 CCL25O15444 150 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 G0S2P27469 103 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 XCL1P47992 114 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 SMAGPQ0VAQ4 97 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 FOXI1Q12951 378 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 Q8N8P6 123 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 FAM104AQ969W3 186 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 OPRPNQ99935 248 aaPredicted RBP9.9□□□□□ -0.82
LIG1-219ENST00000600055 ALKBH7Q9BT30 221 aaPredicted RBP9.9□□□□□ -0.82
LIG1-219ENST00000600055 TIMM21Q9BVV7 248 aa9.9□□□□□ -0.82
LIG1-219ENST00000600055 PRSS3P2Q8NHM4 247 aa9.89□□□□□ -0.83
LIG1-219ENST00000600055 hDV102S1A0JD36 115 aa9.88□□□□□ -0.83
LIG1-219ENST00000600055 TRGC2P03986 189 aa9.88□□□□□ -0.83
LIG1-219ENST00000600055 IFI27P40305 119 aaPredicted RBP9.88□□□□□ -0.83
LIG1-219ENST00000600055 RAB5BP61020 215 aa9.88□□□□□ -0.83
LIG1-219ENST00000600055 SS18Q15532 418 aa9.88□□□□□ -0.83
LIG1-219ENST00000600055 C15orf56Q8N910 161 aa9.88□□□□□ -0.83
LIG1-219ENST00000600055 TRAV13-1A0A0B4J241 112 aa9.87□□□□□ -0.83
LIG1-219ENST00000600055 KRTAP4-5Q9BYR2 181 aa9.87□□□□□ -0.83
LIG1-219ENST00000600055 SPANXA1Q9NS26 97 aa9.87□□□□□ -0.83
LIG1-219ENST00000600055 SLPIP03973 132 aa9.86□□□□□ -0.83
LIG1-219ENST00000600055 HIGD2BQ4VC39 106 aa9.86□□□□□ -0.83
LIG1-219ENST00000600055 ORMDL2Q53FV1 153 aa9.86□□□□□ -0.83
LIG1-219ENST00000600055 LINC01549A6NIU2 74 aa9.85□□□□□ -0.83
LIG1-219ENST00000600055 CFAP161Q6P656 301 aa9.85□□□□□ -0.83
LIG1-219ENST00000600055 CD164L2Q6UWJ8 174 aa9.85□□□□□ -0.83
LIG1-219ENST00000600055 FA2HQ7L5A8 372 aa9.85□□□□□ -0.83
LIG1-219ENST00000600055 DNAH8Q96JB1 4490 aa9.85□□□□□ -0.83
LIG1-219ENST00000600055 C1orf196B1AJZ1 125 aa9.84□□□□□ -0.83
LIG1-219ENST00000600055 MRPS36P82909 103 aaKnown RBP9.84□□□□□ -0.83
LIG1-219ENST00000600055 C2orf66Q6UXQ4 117 aa9.84□□□□□ -0.83
LIG1-219ENST00000600055 Q6ZSA8 131 aa9.84□□□□□ -0.83
LIG1-219ENST00000600055 IGLV4-3A0A075B6K6 122 aa9.83□□□□□ -0.84
LIG1-219ENST00000600055 Q8N1X5 172 aa9.83□□□□□ -0.84
LIG1-219ENST00000600055 C9orf163Q8N9P6 203 aa9.83□□□□□ -0.84
LIG1-219ENST00000600055 AP5S1Q9NUS5 200 aa9.83□□□□□ -0.84
LIG1-219ENST00000600055 CYSLTR1Q9Y271 337 aa9.83□□□□□ -0.84
LIG1-219ENST00000600055 PYGO1Q9Y3Y4 419 aa9.83□□□□□ -0.84
LIG1-219ENST00000600055 SMR3BP02814 79 aaPredicted RBP9.82□□□□□ -0.84
LIG1-219ENST00000600055 LINC00614P0C842 121 aa9.82□□□□□ -0.84
LIG1-219ENST00000600055 CNBPP62633 177 aaKnown RBP9.82□□□□□ -0.84
LIG1-219ENST00000600055 BAGE3Q86Y29 109 aa9.82□□□□□ -0.84
LIG1-219ENST00000600055 C18orf32Q8TCD1 76 aa9.82□□□□□ -0.84
LIG1-219ENST00000600055 GVQW2A0A096LPI5 108 aaPredicted RBP9.81□□□□□ -0.84
LIG1-219ENST00000600055 IGHV1-58A0A0C4DH39 117 aa9.81□□□□□ -0.84
LIG1-219ENST00000600055 IFITM10A6NMD0 228 aa9.81□□□□□ -0.84
LIG1-219ENST00000600055 ZC2HC1BQ5TFG8 222 aa9.81□□□□□ -0.84
LIG1-219ENST00000600055 C5orf38Q86SI9 138 aa9.81□□□□□ -0.84
LIG1-219ENST00000600055 LINC00526Q96FQ7 95 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms