RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 KRTAP29-1A8MX34 341 aaPredicted RBP12.15□□□□□ -0.46
PNKP-213ENST00000599543 TNFRSF6BO95407 300 aa12.15□□□□□ -0.46
PNKP-213ENST00000599543 SUMO2P61956 95 aaKnown RBP12.15□□□□□ -0.46
PNKP-213ENST00000599543 RHEBQ15382 184 aa12.14□□□□□ -0.47
PNKP-213ENST00000599543 C20orf203Q8NBC4 194 aa12.14□□□□□ -0.47
PNKP-213ENST00000599543 IMMP2LQ96T52 175 aa12.14□□□□□ -0.47
PNKP-213ENST00000599543 PRSS1P07477 247 aa12.13□□□□□ -0.47
PNKP-213ENST00000599543 DGAT2L7PQ6IED9 249 aa12.13□□□□□ -0.47
PNKP-213ENST00000599543 TRBV27A0A0K0K1C4 114 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 VCYO14598 125 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 S100PP25815 95 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 FCER1GP30273 86 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 REG3AQ06141 175 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 RNASEKQ6P5S7 137 aaKnown RBP12.12□□□□□ -0.47
PNKP-213ENST00000599543 TMEM136Q6ZRR5 245 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 PRELID3AQ96N28 172 aa12.12□□□□□ -0.47
PNKP-213ENST00000599543 IGKV3OR2-268A0A0C4DH90 116 aa12.11□□□□□ -0.47
PNKP-213ENST00000599543 PPP1R17O96001 155 aa12.11□□□□□ -0.47
PNKP-213ENST00000599543 KIAA1644Q3SXP7 199 aa12.11□□□□□ -0.47
PNKP-213ENST00000599543 AMMECR1LQ6DCA0 310 aa12.11□□□□□ -0.47
PNKP-213ENST00000599543 ORMDL3Q8N138 153 aa12.11□□□□□ -0.47
PNKP-213ENST00000599543 IGLV10-54A0A075B6I4 117 aa12.1□□□□□ -0.47
PNKP-213ENST00000599543 LOC389332A0A1B0GUA5 103 aa12.1□□□□□ -0.47
PNKP-213ENST00000599543 FGF6P10767 208 aa12.1□□□□□ -0.47
PNKP-213ENST00000599543 ESDP10768 282 aa12.1□□□□□ -0.47
PNKP-213ENST00000599543 KRTAP10-4P60372 401 aaPredicted RBP12.1□□□□□ -0.47
PNKP-213ENST00000599543 NDUFA5Q16718 116 aa12.1□□□□□ -0.47
PNKP-213ENST00000599543 KRTAP26-1Q6PEX3 210 aa12.1□□□□□ -0.47
PNKP-213ENST00000599543 TRBV24-1A0A075B6N3 115 aa12.09□□□□□ -0.47
PNKP-213ENST00000599543 TCAPO15273 167 aa12.09□□□□□ -0.47
PNKP-213ENST00000599543 C20orf78Q9BR46 151 aa12.09□□□□□ -0.47
PNKP-213ENST00000599543 SMIM2Q9BVW6 85 aa12.09□□□□□ -0.47
PNKP-213ENST00000599543 LRP1Q07954 4544 aaKnown RBP12.09□□□□□ -0.47
PNKP-213ENST00000599543 SNAPINO95295 136 aa12.08□□□□□ -0.48
PNKP-213ENST00000599543 PPBPP02775 128 aa12.08□□□□□ -0.48
PNKP-213ENST00000599543 SVBPQ8N300 66 aa12.08□□□□□ -0.48
PNKP-213ENST00000599543 C9orf163Q8N9P6 203 aa12.08□□□□□ -0.48
PNKP-213ENST00000599543 KIR2DL4Q99706 377 aa12.08□□□□□ -0.48
PNKP-213ENST00000599543 TRAV9-1A0A075B6T8 112 aa12.07□□□□□ -0.48
PNKP-213ENST00000599543 TGIF2-C20orf24A0A0A6YYL0 155 aa12.07□□□□□ -0.48
PNKP-213ENST00000599543 TRAV8-4A0A0B4J246 113 aa12.07□□□□□ -0.48
PNKP-213ENST00000599543 A0A1B0GUV1 79 aa12.07□□□□□ -0.48
PNKP-213ENST00000599543 hDV102S1A0JD36 115 aa12.06□□□□□ -0.48
PNKP-213ENST00000599543 RPL37AP61513 92 aaKnown RBP12.06□□□□□ -0.48
PNKP-213ENST00000599543 PHOX2AO14813 284 aa12.04□□□□□ -0.48
PNKP-213ENST00000599543 RPL39P62891 51 aaKnown RBP12.04□□□□□ -0.48
PNKP-213ENST00000599543 RPL32P62910 135 aaKnown RBP12.04□□□□□ -0.48
PNKP-213ENST00000599543 RNASE13Q5GAN3 156 aaKnown RBP12.04□□□□□ -0.48
PNKP-213ENST00000599543 MAP1LC3AQ9H492 121 aa12.04□□□□□ -0.48
PNKP-213ENST00000599543 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.04□□□□□ -0.48
PNKP-213ENST00000599543 H7C423 109 aa12.03□□□□□ -0.48
PNKP-213ENST00000599543 OXTP01178 125 aa12.03□□□□□ -0.48
PNKP-213ENST00000599543 CNBPP62633 177 aaKnown RBP12.03□□□□□ -0.48
PNKP-213ENST00000599543 OR5A1Q8NGJ0 315 aa12.03□□□□□ -0.48
PNKP-213ENST00000599543 TMEM101Q96IK0 257 aa12.03□□□□□ -0.48
PNKP-213ENST00000599543 AP5S1Q9NUS5 200 aa12.03□□□□□ -0.48
PNKP-213ENST00000599543 SDIM1Q6ZPB5 146 aa12.02□□□□□ -0.49
PNKP-213ENST00000599543 GNB1LQ9BYB4 327 aa12.02□□□□□ -0.49
PNKP-213ENST00000599543 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.01□□□□□ -0.49
PNKP-213ENST00000599543 MRPL18Q9H0U6 180 aaKnown RBP12.01□□□□□ -0.49
PNKP-213ENST00000599543 UBE2D4Q9Y2X8 147 aa12.01□□□□□ -0.49
PNKP-213ENST00000599543 PANO1I0J062 215 aa12□□□□□ -0.49
PNKP-213ENST00000599543 ZNF25P17030 456 aaPredicted RBP12□□□□□ -0.49
PNKP-213ENST00000599543 FABP9Q0Z7S8 132 aa12□□□□□ -0.49
PNKP-213ENST00000599543 Q6ZUT4 128 aa12□□□□□ -0.49
PNKP-213ENST00000599543 MRPL52Q86TS9 123 aaKnown RBP12□□□□□ -0.49
PNKP-213ENST00000599543 CBLN2Q8IUK8 224 aa12□□□□□ -0.49
PNKP-213ENST00000599543 FAT3Q8TDW7 4589 aa12□□□□□ -0.49
PNKP-213ENST00000599543 IGHV3-64A0A075B6Q5 118 aa11.99□□□□□ -0.49
PNKP-213ENST00000599543 GAGE12HA6NDE8 117 aa11.99□□□□□ -0.49
PNKP-213ENST00000599543 RAB5AP20339 215 aa11.99□□□□□ -0.49
PNKP-213ENST00000599543 SERTAD4-AS1Q5TG53 156 aa11.99□□□□□ -0.49
PNKP-213ENST00000599543 OPRPNQ99935 248 aaPredicted RBP11.99□□□□□ -0.49
PNKP-213ENST00000599543 CDC42SE2Q9NRR3 84 aa11.99□□□□□ -0.49
PNKP-213ENST00000599543 LAMTOR2Q9Y2Q5 125 aa11.99□□□□□ -0.49
PNKP-213ENST00000599543 PKHD1L1Q86WI1 4243 aa11.98□□□□□ -0.49
PNKP-213ENST00000599543 IFI27P40305 119 aaPredicted RBP11.98□□□□□ -0.49
PNKP-213ENST00000599543 ZNF664Q8N3J9 261 aa11.98□□□□□ -0.49
PNKP-213ENST00000599543 Q8N8P6 123 aa11.98□□□□□ -0.49
PNKP-213ENST00000599543 PRSS47A8MTI9 375 aa11.97□□□□□ -0.49
PNKP-213ENST00000599543 CIRBPQ14011 172 aaKnown RBP11.97□□□□□ -0.49
PNKP-213ENST00000599543 CHCHD10Q8WYQ3 142 aaPredicted RBP11.97□□□□□ -0.49
PNKP-213ENST00000599543 ALKBH7Q9BT30 221 aaPredicted RBP11.97□□□□□ -0.49
PNKP-213ENST00000599543 TMEM18Q96B42 140 aa11.96□□□□□ -0.49
PNKP-213ENST00000599543 DPH3Q96FX2 82 aa11.96□□□□□ -0.49
PNKP-213ENST00000599543 YPEL4Q96NS1 127 aa11.96□□□□□ -0.49
PNKP-213ENST00000599543 TRAPPC1Q9Y5R8 145 aa11.96□□□□□ -0.49
PNKP-213ENST00000599543 LINC00959A0A1B0GUT2 108 aa11.95□□□□□ -0.5
PNKP-213ENST00000599543 MT-ND6P03923 174 aa11.95□□□□□ -0.5
PNKP-213ENST00000599543 XCL1P47992 114 aa11.95□□□□□ -0.5
PNKP-213ENST00000599543 HNRNPA3P51991 378 aaKnown RBP11.95□□□□□ -0.5
PNKP-213ENST00000599543 COX19Q49B96 90 aa11.95□□□□□ -0.5
PNKP-213ENST00000599543 CFAP161Q6P656 301 aa11.95□□□□□ -0.5
PNKP-213ENST00000599543 CCL25O15444 150 aa11.94□□□□□ -0.5
PNKP-213ENST00000599543 SLPIP03973 132 aa11.94□□□□□ -0.5
PNKP-213ENST00000599543 C15orf56Q8N910 161 aa11.94□□□□□ -0.5
PNKP-213ENST00000599543 FAM104AQ969W3 186 aa11.94□□□□□ -0.5
PNKP-213ENST00000599543 TRAV13-1A0A0B4J241 112 aa11.93□□□□□ -0.5
PNKP-213ENST00000599543 CHTF8P0CG12 524 aa11.93□□□□□ -0.5
PNKP-213ENST00000599543 TIMM21Q9BVV7 248 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms