RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 RMI2Q96E14 147 aa12.11□□□□□ -0.47
LIG1-216ENST00000598938 K7EMI3 77 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 IFI27P40305 119 aaPredicted RBP12.1□□□□□ -0.47
LIG1-216ENST00000598938 SMAGPQ0VAQ4 97 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 MAPKAPK5-AS1Q8N8E1 139 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 TMEM101Q96IK0 257 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 TIMM21Q9BVV7 248 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 UBE2D4Q9Y2X8 147 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 COX11Q9Y6N1 276 aa12.1□□□□□ -0.47
LIG1-216ENST00000598938 IGKV2D-24A0A075B6R9 120 aa12.09□□□□□ -0.47
LIG1-216ENST00000598938 RPL39P62891 51 aaKnown RBP12.09□□□□□ -0.47
LIG1-216ENST00000598938 OR5A1Q8NGJ0 315 aa12.09□□□□□ -0.47
LIG1-216ENST00000598938 CSDC2Q9Y534 153 aaKnown RBP12.09□□□□□ -0.47
LIG1-216ENST00000598938 COLCA2A8K830 154 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 C16orf90A8MZG2 172 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 PSCAO43653 123 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 SCO1O75880 301 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 ORMDL2Q53FV1 153 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 C1orf43Q9BWL3 253 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 CDC42SE2Q9NRR3 84 aa12.08□□□□□ -0.48
LIG1-216ENST00000598938 PRSS3P2Q8NHM4 247 aa12.07□□□□□ -0.48
LIG1-216ENST00000598938 A0A087WTM6 91 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 TRAV8-4A0A0B4J246 113 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 LINC01546A6NGU7 62 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 DGAT2L7PQ6IED9 249 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 ZNF664Q8N3J9 261 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 C18orf32Q8TCD1 76 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 SPANXA1Q9NS26 97 aa12.06□□□□□ -0.48
LIG1-216ENST00000598938 LRCOL1A6NCL2 159 aa12.05□□□□□ -0.48
LIG1-216ENST00000598938 KRTAP26-1Q6PEX3 210 aa12.05□□□□□ -0.48
LIG1-216ENST00000598938 Q8N1X5 172 aa12.05□□□□□ -0.48
LIG1-216ENST00000598938 FAM104AQ969W3 186 aa12.04□□□□□ -0.48
LIG1-216ENST00000598938 IGLV10-54A0A075B6I4 117 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 ATP6V1G1O75348 118 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 S100A1P23297 94 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 MRPS36P82909 103 aaKnown RBP12.03□□□□□ -0.48
LIG1-216ENST00000598938 C2orf66Q6UXQ4 117 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 Q6ZUT4 128 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 CYSLTR1Q9Y271 337 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 PYGO1Q9Y3Y4 419 aa12.03□□□□□ -0.48
LIG1-216ENST00000598938 IGKV3OR2-268A0A0C4DH90 116 aa12.02□□□□□ -0.49
LIG1-216ENST00000598938 TRGC2P03986 189 aa12.02□□□□□ -0.49
LIG1-216ENST00000598938 FA2HQ7L5A8 372 aa12.02□□□□□ -0.49
LIG1-216ENST00000598938 EREGO14944 169 aa12.01□□□□□ -0.49
LIG1-216ENST00000598938 G0S2P27469 103 aa12.01□□□□□ -0.49
LIG1-216ENST00000598938 WFDC2Q14508 124 aa12.01□□□□□ -0.49
LIG1-216ENST00000598938 URB1-AS1Q96HZ7 61 aa12.01□□□□□ -0.49
LIG1-216ENST00000598938 DNAH5Q8TE73 4624 aa12□□□□□ -0.49
LIG1-216ENST00000598938 LINC00959A0A1B0GUT2 108 aa12□□□□□ -0.49
LIG1-216ENST00000598938 RNASE13Q5GAN3 156 aaKnown RBP12□□□□□ -0.49
LIG1-216ENST00000598938 BAALCQ8WXS3 180 aa12□□□□□ -0.49
LIG1-216ENST00000598938 TOMM6Q96B49 74 aa12□□□□□ -0.49
LIG1-216ENST00000598938 OPRPNQ99935 248 aaPredicted RBP12□□□□□ -0.49
LIG1-216ENST00000598938 LRP1BQ9NZR2 4599 aa11.99□□□□□ -0.49
LIG1-216ENST00000598938 CHCHD10Q8WYQ3 142 aaPredicted RBP11.99□□□□□ -0.49
LIG1-216ENST00000598938 IGLV4-3A0A075B6K6 122 aa11.98□□□□□ -0.49
LIG1-216ENST00000598938 IGIPA6NJ69 53 aa11.98□□□□□ -0.49
LIG1-216ENST00000598938 NPSP0C0P6 89 aa11.98□□□□□ -0.49
LIG1-216ENST00000598938 LINC00614P0C842 121 aa11.98□□□□□ -0.49
LIG1-216ENST00000598938 AP5S1Q9NUS5 200 aa11.98□□□□□ -0.49
LIG1-216ENST00000598938 GAGE12HA6NDE8 117 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 LECT2O14960 151 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 CCL25O15444 150 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 KRTAP10-2P60368 255 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 RAB5BP61020 215 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 SPATA12Q7Z6I5 190 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 Q8N814 137 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 HERC1Q15751 4861 aa11.97□□□□□ -0.49
LIG1-216ENST00000598938 LINC01549A6NIU2 74 aa11.96□□□□□ -0.49
LIG1-216ENST00000598938 SS18Q15532 418 aa11.96□□□□□ -0.49
LIG1-216ENST00000598938 TMEM141Q96I45 108 aa11.96□□□□□ -0.49
LIG1-216ENST00000598938 TIMM17AQ99595 171 aa11.96□□□□□ -0.49
LIG1-216ENST00000598938 C1orf196B1AJZ1 125 aa11.95□□□□□ -0.5
LIG1-216ENST00000598938 APOBP04114 4563 aaKnown RBP11.95□□□□□ -0.5
LIG1-216ENST00000598938 DMBT1Q9UGM3 2413 aaPredicted RBP11.94□□□□□ -0.5
LIG1-216ENST00000598938 A0A096LNJ9 63 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 TRAV13-1A0A0B4J241 112 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 USP17L23D6RBM5 183 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 XCL1P47992 114 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 FOXI1Q12951 378 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 ERASQ7Z444 233 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 PGPEP1Q9NXJ5 209 aa11.94□□□□□ -0.5
LIG1-216ENST00000598938 IFITM10A6NMD0 228 aa11.93□□□□□ -0.5
LIG1-216ENST00000598938 CD164L2Q6UWJ8 174 aa11.93□□□□□ -0.5
LIG1-216ENST00000598938 CHCHD1Q96BP2 118 aaKnown RBP11.93□□□□□ -0.5
LIG1-216ENST00000598938 SCGB3A1Q96QR1 104 aa11.93□□□□□ -0.5
LIG1-216ENST00000598938 AMELXQ99217 191 aa11.93□□□□□ -0.5
LIG1-216ENST00000598938 C14orf177Q52M58 125 aa11.92□□□□□ -0.5
LIG1-216ENST00000598938 CDPF1Q6NVV7 123 aa11.92□□□□□ -0.5
LIG1-216ENST00000598938 Q6ZN92 141 aa11.92□□□□□ -0.5
LIG1-216ENST00000598938 TEX43Q6ZNM6 134 aa11.92□□□□□ -0.5
LIG1-216ENST00000598938 LINC00173Q6ZV60 143 aa11.92□□□□□ -0.5
LIG1-216ENST00000598938 NTN5Q8WTR8 489 aaPredicted RBP11.92□□□□□ -0.5
LIG1-216ENST00000598938 PAPPA-AS1Q5QFB9 102 aa11.91□□□□□ -0.5
LIG1-216ENST00000598938 HBDP02042 147 aa11.9□□□□□ -0.5
LIG1-216ENST00000598938 FUSP35637 526 aaKnown RBP eCLIP11.9□□□□□ -0.5
LIG1-216ENST00000598938 PMCHL1Q16048 86 aa11.9□□□□□ -0.5
LIG1-216ENST00000598938 ZC2HC1BQ5TFG8 222 aa11.9□□□□□ -0.5
LIG1-216ENST00000598938 BAGE3Q86Y29 109 aa11.9□□□□□ -0.5
LIG1-216ENST00000598938 VCX2Q9H322 139 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms