RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TRGC2P03986 189 aa7.04□□□□□ -1.28
LIG1-210ENST00000596332 IFI27P40305 119 aaPredicted RBP7.04□□□□□ -1.28
LIG1-210ENST00000596332 TNP2Q05952 138 aa7.04□□□□□ -1.28
LIG1-210ENST00000596332 MRPL52Q86TS9 123 aaKnown RBP7.04□□□□□ -1.28
LIG1-210ENST00000596332 TRAPPC1Q9Y5R8 145 aa7.04□□□□□ -1.28
LIG1-210ENST00000596332 HECTD4Q9Y4D8 3996 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 TRAV9-2A0A087WT02 112 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 FGF6P10767 208 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 RPL39P62891 51 aaKnown RBP7.03□□□□□ -1.28
LIG1-210ENST00000596332 LAGE3Q14657 143 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 HIST3H2BBQ8N257 126 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 LINC00269Q8N2A0 174 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 C10orf126Q8N4M7 172 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 UBE2D4Q9Y2X8 147 aa7.03□□□□□ -1.28
LIG1-210ENST00000596332 A0A087WX48 190 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 LRCOL1A6NCL2 159 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 LINC00587B1AMM8 73 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 TSTD3H0UI37 97 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 COA6Q5JTJ3 125 aaKnown RBP7.02□□□□□ -1.29
LIG1-210ENST00000596332 OR10D4PQ8NGN7 298 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 C18orf32Q8TCD1 76 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 KIR2DL4Q99706 377 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 MAP1LC3AQ9H492 121 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 CDC42SE2Q9NRR3 84 aa7.02□□□□□ -1.29
LIG1-210ENST00000596332 ANGP03950 147 aaKnown RBP7.01□□□□□ -1.29
LIG1-210ENST00000596332 PKIAP61925 76 aa7.01□□□□□ -1.29
LIG1-210ENST00000596332 WFDC2Q14508 124 aa7.01□□□□□ -1.29
LIG1-210ENST00000596332 UBE2WQ96B02 151 aa7.01□□□□□ -1.29
LIG1-210ENST00000596332 OPRPNQ99935 248 aaPredicted RBP7.01□□□□□ -1.29
LIG1-210ENST00000596332 TIMM21Q9BVV7 248 aa7.01□□□□□ -1.29
LIG1-210ENST00000596332 CSDC2Q9Y534 153 aaKnown RBP7.01□□□□□ -1.29
LIG1-210ENST00000596332 A0A096LNJ9 63 aa7□□□□□ -1.29
LIG1-210ENST00000596332 FCER1GP30273 86 aa7□□□□□ -1.29
LIG1-210ENST00000596332 PYY3Q5JQD4 70 aa7□□□□□ -1.29
LIG1-210ENST00000596332 Q9HAA7 133 aa7□□□□□ -1.29
LIG1-210ENST00000596332 NXT2Q9NPJ8 142 aaKnown RBP7□□□□□ -1.29
LIG1-210ENST00000596332 TRAV8-3A0A0A6YYJ7 113 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 PRSS29PA6NIE9 313 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 IGIPA6NJ69 53 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 IFITM10A6NMD0 228 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 ZNF25P17030 456 aaPredicted RBP6.99□□□□□ -1.29
LIG1-210ENST00000596332 LINC00310P59036 64 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 REG3AQ06141 175 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 LBHQ53QV2 105 aaPredicted RBP6.99□□□□□ -1.29
LIG1-210ENST00000596332 CLPSL2Q6UWE3 100 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 LINC00336Q6ZUF6 198 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 TMEM18Q96B42 140 aa6.99□□□□□ -1.29
LIG1-210ENST00000596332 PACRGQ96M98 296 aaPredicted RBP6.99□□□□□ -1.29
LIG1-210ENST00000596332 A0A087WTM6 91 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 K7EMI3 77 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 UBE2L6O14933 153 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 FABP4P15090 132 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 JOSD1Q15040 202 aaPredicted RBP6.98□□□□□ -1.29
LIG1-210ENST00000596332 RNASEKQ6P5S7 137 aaKnown RBP6.98□□□□□ -1.29
LIG1-210ENST00000596332 Q6ZUT4 128 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 NFE4Q86UQ8 179 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 ZNF664Q8N3J9 261 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 PYGO1Q9Y3Y4 419 aa6.98□□□□□ -1.29
LIG1-210ENST00000596332 DNAH5Q8TE73 4624 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 DYNC1H1Q14204 4646 aaKnown RBP6.97□□□□□ -1.29
LIG1-210ENST00000596332 KRTAP10-2P60368 255 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 MRPS36P82909 103 aaKnown RBP6.97□□□□□ -1.29
LIG1-210ENST00000596332 Q0VG73 95 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 MIAQ16674 131 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 RNASE13Q5GAN3 156 aaKnown RBP6.97□□□□□ -1.29
LIG1-210ENST00000596332 C2orf66Q6UXQ4 117 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 LINC00173Q6ZV60 143 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 OR5A1Q8NGJ0 315 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 TOMM6Q96B49 74 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 HIST1H2BLQ99880 126 aa6.97□□□□□ -1.29
LIG1-210ENST00000596332 PKHD1P08F94 4074 aa6.96□□□□□ -1.29
LIG1-210ENST00000596332 IGLV10-54A0A075B6I4 117 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 IGLV4-3A0A075B6K6 122 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 LINC00959A0A1B0GUT2 108 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 NUPR1O60356 82 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 LINC00614P0C842 121 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 ORMDL2Q53FV1 153 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 ZC2HC1BQ5TFG8 222 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 AMMECR1LQ6DCA0 310 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 PRSS3P2Q8NHM4 247 aa6.96□□□□□ -1.3
LIG1-210ENST00000596332 IGKV2D-24A0A075B6R9 120 aa6.95□□□□□ -1.3
LIG1-210ENST00000596332 FUSP35637 526 aaKnown RBP eCLIP6.95□□□□□ -1.3
LIG1-210ENST00000596332 BAALCQ8WXS3 180 aa6.95□□□□□ -1.3
LIG1-210ENST00000596332 AMELXQ99217 191 aa6.95□□□□□ -1.3
LIG1-210ENST00000596332 SPANXA1Q9NS26 97 aa6.95□□□□□ -1.3
LIG1-210ENST00000596332 TRAV8-4A0A0B4J246 113 aa6.94□□□□□ -1.3
LIG1-210ENST00000596332 DDTP30046 118 aa6.94□□□□□ -1.3
LIG1-210ENST00000596332 FOXI1Q12951 378 aa6.94□□□□□ -1.3
LIG1-210ENST00000596332 PDZD11Q5EBL8 140 aa6.94□□□□□ -1.3
LIG1-210ENST00000596332 NTN5Q8WTR8 489 aaPredicted RBP6.94□□□□□ -1.3
LIG1-210ENST00000596332 TM2D2Q9BX73 214 aa6.94□□□□□ -1.3
LIG1-210ENST00000596332 CYSLTR1Q9Y271 337 aa6.94□□□□□ -1.3
LIG1-210ENST00000596332 BIRC6Q9NR09 4857 aa6.93□□□□□ -1.3
LIG1-210ENST00000596332 LECT2O14960 151 aa6.93□□□□□ -1.3
LIG1-210ENST00000596332 PMCHL1Q16048 86 aa6.93□□□□□ -1.3
LIG1-210ENST00000596332 LINC00469Q8N7U9 141 aa6.93□□□□□ -1.3
LIG1-210ENST00000596332 CHCHD10Q8WYQ3 142 aaPredicted RBP6.93□□□□□ -1.3
LIG1-210ENST00000596332 TMEM101Q96IK0 257 aa6.93□□□□□ -1.3
LIG1-210ENST00000596332 IGKV3OR2-268A0A0C4DH90 116 aa6.92□□□□□ -1.3
LIG1-210ENST00000596332 GAGE12HA6NDE8 117 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms