RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 CUBNO60494 3623 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 INAFM1C9JVW0 142 aa7.9□□□□□ -1.15
VPS4B-206ENST00000591475 HOXD3P31249 432 aaPredicted RBP7.9□□□□□ -1.15
VPS4B-206ENST00000591475 RNASE13Q5GAN3 156 aaKnown RBP7.9□□□□□ -1.15
VPS4B-206ENST00000591475 ADAMTSL4-AS1Q5T5F5 129 aa7.9□□□□□ -1.15
VPS4B-206ENST00000591475 RNF183Q96D59 192 aa7.9□□□□□ -1.15
VPS4B-206ENST00000591475 DUX3Q96PT4 197 aa7.9□□□□□ -1.15
VPS4B-206ENST00000591475 KNCNA6PVL3 124 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 H3BMM0 161 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 SNCGO76070 127 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 COX6CP09669 75 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 ZNF415Q09FC8 603 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 PIK3CD-AS1Q5SR53 167 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 UBE2WQ96B02 151 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 CHCHD7Q9BUK0 85 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 UBE2D4Q9Y2X8 147 aa7.89□□□□□ -1.15
VPS4B-206ENST00000591475 NACAE9PAV3 2078 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 TRAV8-4A0A0B4J246 113 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 HILS1P60008 231 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 ESM1Q9NQ30 184 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 NF1P21359 2839 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 A8MTW9 85 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 TIMM17BO60830 172 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 RNASE1P07998 156 aaKnown RBP7.88□□□□□ -1.15
VPS4B-206ENST00000591475 C2orf82Q6UX34 121 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 Q8N2B8 174 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 UBE2E2Q96LR5 201 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 ZNF702PQ9H963 129 aa7.88□□□□□ -1.15
VPS4B-206ENST00000591475 TEX49A0A1B0GTD5 131 aa7.87□□□□□ -1.15
VPS4B-206ENST00000591475 DEFB131AP59861 70 aa7.87□□□□□ -1.15
VPS4B-206ENST00000591475 GAGE2BQ13066 116 aa7.87□□□□□ -1.15
VPS4B-206ENST00000591475 GAGE2EQ4V326 116 aa7.87□□□□□ -1.15
VPS4B-206ENST00000591475 DNAJC30Q96LL9 226 aa7.87□□□□□ -1.15
VPS4B-206ENST00000591475 GAGE2DQ9UEU5 116 aa7.87□□□□□ -1.15
VPS4B-206ENST00000591475 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.86□□□□□ -1.15
VPS4B-206ENST00000591475 IGKV2-29A2NJV5 120 aaPredicted RBP7.86□□□□□ -1.15
VPS4B-206ENST00000591475 H3BT86 120 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 CRLF1O75462 422 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 IFITM1P13164 125 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 Q6ZSN1 163 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 F8P00451 2351 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 A8MZ25 164 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 H7C423 109 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 NPC2P61916 151 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 TMEM61Q8N0U2 210 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 LINC00467Q9BRT7 94 aa7.86□□□□□ -1.15
VPS4B-206ENST00000591475 RBMY1BA6NDE4 496 aaKnown RBP7.85□□□□□ -1.15
VPS4B-206ENST00000591475 RBMY1EA6NEQ0 496 aaKnown RBP7.85□□□□□ -1.15
VPS4B-206ENST00000591475 RBMY1DP0C7P1 496 aaKnown RBP7.85□□□□□ -1.15
VPS4B-206ENST00000591475 Q9UF83 564 aa7.85□□□□□ -1.15
VPS4B-206ENST00000591475 TRAV4A0A0B4J268 109 aa7.85□□□□□ -1.15
VPS4B-206ENST00000591475 NDUFA1O15239 70 aa7.85□□□□□ -1.15
VPS4B-206ENST00000591475 IGHV3-53P01767 116 aa7.85□□□□□ -1.15
VPS4B-206ENST00000591475 Q6Q795 121 aa7.85□□□□□ -1.15
VPS4B-206ENST00000591475 NIPBLQ6KC79 2804 aaeCLIP7.84□□□□□ -1.15
VPS4B-206ENST00000591475 LST1O00453 97 aa7.84□□□□□ -1.15
VPS4B-206ENST00000591475 PRM2P04554 102 aa7.84□□□□□ -1.15
VPS4B-206ENST00000591475 SLURP1P55000 103 aa7.84□□□□□ -1.15
VPS4B-206ENST00000591475 TIRAPP58753 221 aa7.84□□□□□ -1.15
VPS4B-206ENST00000591475 Q6ZSV7 163 aa7.84□□□□□ -1.15
VPS4B-206ENST00000591475 CLEC2BQ92478 149 aa7.84□□□□□ -1.15
VPS4B-206ENST00000591475 MAST4O15021 2626 aa7.84□□□□□ -1.16
VPS4B-206ENST00000591475 FN1P02751 2386 aaKnown RBP7.84□□□□□ -1.16
VPS4B-206ENST00000591475 IGLV5-45A0A087WSX0 123 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 IGHV3-38A0A0C4DH36 116 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 NDUFV3P56181 108 aaKnown RBP7.83□□□□□ -1.16
VPS4B-206ENST00000591475 CIRBPQ14011 172 aaKnown RBP7.83□□□□□ -1.16
VPS4B-206ENST00000591475 TTC32Q5I0X7 151 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 C15orf53Q8NAA6 179 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 CDKN2A-AS1Q9UH64 79 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE5Q13069 117 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE6Q13070 117 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 MRPL23Q16540 153 aaKnown RBP7.83□□□□□ -1.16
VPS4B-206ENST00000591475 DGAT2L7PQ6IED9 249 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 TMEM101Q96IK0 257 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 LINC01587Q99440 93 aa7.83□□□□□ -1.16
VPS4B-206ENST00000591475 RS1O15537 224 aa7.82□□□□□ -1.16
VPS4B-206ENST00000591475 NHLRC4P0CG21 123 aaPredicted RBP7.82□□□□□ -1.16
VPS4B-206ENST00000591475 BEAN1Q3B7T3 259 aa7.82□□□□□ -1.16
VPS4B-206ENST00000591475 C11orf72Q8NBR9 251 aa7.82□□□□□ -1.16
VPS4B-206ENST00000591475 C16orf95Q9H693 158 aa7.82□□□□□ -1.16
VPS4B-206ENST00000591475 SORL1Q92673 2214 aa7.82□□□□□ -1.16
VPS4B-206ENST00000591475 INSP01308 110 aa7.81□□□□□ -1.16
VPS4B-206ENST00000591475 DEFB136Q30KP8 78 aa7.81□□□□□ -1.16
VPS4B-206ENST00000591475 DEFB121Q5J5C9 76 aa7.81□□□□□ -1.16
VPS4B-206ENST00000591475 MAP6D1Q9H9H5 199 aa7.81□□□□□ -1.16
VPS4B-206ENST00000591475 PEMTQ9UBM1 199 aa7.81□□□□□ -1.16
VPS4B-206ENST00000591475 DAND5Q8N907 189 aa7.81□□□□□ -1.16
VPS4B-206ENST00000591475 FAM240AA0A1B0GVK7 77 aa7.8□□□□□ -1.16
VPS4B-206ENST00000591475 NDUFA7O95182 113 aa7.8□□□□□ -1.16
VPS4B-206ENST00000591475 HERVK_113P63121 156 aa7.8□□□□□ -1.16
VPS4B-206ENST00000591475 C18orf65Q6ZTR6 163 aa7.8□□□□□ -1.16
VPS4B-206ENST00000591475 COPS9Q8WXC6 57 aa7.8□□□□□ -1.16
VPS4B-206ENST00000591475 COX6A2Q02221 97 aa7.79□□□□□ -1.16
VPS4B-206ENST00000591475 LINC01006Q8NI28 216 aa7.79□□□□□ -1.16
VPS4B-206ENST00000591475 LINC00308Q8TCZ7 52 aa7.79□□□□□ -1.16
VPS4B-206ENST00000591475 DYNLRB2Q8TF09 96 aa7.79□□□□□ -1.16
VPS4B-206ENST00000591475 CITED2Q99967 270 aaPredicted RBP7.79□□□□□ -1.16
VPS4B-206ENST00000591475 IGHV3OR16-12A0A075B7B8 117 aa7.79□□□□□ -1.16
VPS4B-206ENST00000591475 IGLV5-39A0A0G2JS06 123 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms