RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 GAGE12FP0CL80 117 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 GAGE12GP0CL81 117 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 GAGE12IP0CL82 117 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 GAGE4Q13068 117 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.81□□□□□ -1
SHMT1-208ENST00000582352 MAPK1IP1LQ8NDC0 245 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 COPS9Q8WXC6 57 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 IGHV3OR16-12A0A075B7B8 117 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 KHDC1LQ5JSQ8 128 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 ZNF625Q96I27 306 aaPredicted RBP8.81□□□□□ -1
SHMT1-208ENST00000582352 CITED2Q99967 270 aaPredicted RBP8.81□□□□□ -1
SHMT1-208ENST00000582352 DOPEY1Q5JWR5 2465 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 A0A0U1RRA0 63 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 COX6A2Q02221 97 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 IGLV5-39A0A0G2JS06 123 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 DEFB121Q5J5C9 76 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 LINC00242Q5T6M2 205 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 Q6YL49 198 aa8.8□□□□□ -1
SHMT1-208ENST00000582352 USP9YO00507 2555 aaPredicted RBP8.79□□□□□ -1
SHMT1-208ENST00000582352 CCDC179H3BU77 68 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 COX7A2LO14548 114 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 MEIG1Q5JSS6 88 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 PRIMA1Q86XR5 153 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 SVIPQ8NHG7 77 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 ZANQ9Y493 2812 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 CSMD2Q7Z408 3487 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 TRAV13-1A0A0B4J241 112 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 SMIM1B2RUZ4 78 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 FLNCQ14315 2725 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 ANKRD17O75179 2603 aaKnown RBP8.78□□□□□ -1
SHMT1-208ENST00000582352 XCL2Q9UBD3 114 aa8.78□□□□□ -1
SHMT1-208ENST00000582352 TRGV1A0A0A0MS02 117 aa8.77□□□□□ -1.01
SHMT1-208ENST00000582352 C4orf3Q8WVX3 66 aa8.77□□□□□ -1.01
SHMT1-208ENST00000582352 PKD1L2Q7Z442 2459 aa8.77□□□□□ -1.01
SHMT1-208ENST00000582352 CFAP46Q8IYW2 2715 aa8.77□□□□□ -1.01
SHMT1-208ENST00000582352 A0A096LNT2 108 aa8.77□□□□□ -1.01
SHMT1-208ENST00000582352 LINC00694P0DN24 101 aa8.77□□□□□ -1.01
SHMT1-208ENST00000582352 RPL36AP83881 106 aaKnown RBP8.77□□□□□ -1.01
SHMT1-208ENST00000582352 RPL36ALQ969Q0 106 aaKnown RBP8.77□□□□□ -1.01
SHMT1-208ENST00000582352 USP9XQ93008 2570 aaPredicted RBP8.77□□□□□ -1.01
SHMT1-208ENST00000582352 NDUFA7O95182 113 aa8.76□□□□□ -1.01
SHMT1-208ENST00000582352 ACYP1P07311 99 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 DEFB114Q30KQ6 69 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 SOSTDC1Q6X4U4 206 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 CSDC2Q9Y534 153 aaKnown RBP8.75□□□□□ -1.01
SHMT1-208ENST00000582352 TRBV7-7A0A0K0K1E9 115 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 K7EQD1 137 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 FSHBP01225 129 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 SHISA2Q6UWI4 295 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 FAM19A3Q7Z5A8 133 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 STHQ8IWL8 128 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 MXRA5Q9NR99 2828 aa8.75□□□□□ -1.01
SHMT1-208ENST00000582352 DAZ2Q13117 558 aaKnown RBP8.74□□□□□ -1.01
SHMT1-208ENST00000582352 DAZ4Q86SG3 579 aaKnown RBP8.74□□□□□ -1.01
SHMT1-208ENST00000582352 Q8N2B8 174 aa8.74□□□□□ -1.01
SHMT1-208ENST00000582352 DAZ3Q9NR90 486 aaKnown RBP8.74□□□□□ -1.01
SHMT1-208ENST00000582352 MYO9AB2RTY4 2548 aa8.74□□□□□ -1.01
SHMT1-208ENST00000582352 TRBV10-1A0A0K0K1A3 114 aa8.74□□□□□ -1.01
SHMT1-208ENST00000582352 HERV-K104P63124 156 aa8.74□□□□□ -1.01
SHMT1-208ENST00000582352 UTP20O75691 2785 aaKnown RBP8.74□□□□□ -1.01
SHMT1-208ENST00000582352 TRACP01848 142 aa8.73□□□□□ -1.01
SHMT1-208ENST00000582352 ODF3L2Q3SX64 289 aa8.73□□□□□ -1.01
SHMT1-208ENST00000582352 F5H768 121 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 UBE2L6O14933 153 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 NTM-AS1Q6ZSK4 140 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 IL17DQ8TAD2 202 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 CDC42SE2Q9NRR3 84 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 POLQO75417 2590 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 IGHV4-31P0DP07 118 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 Q6ZTI0 123 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 C1orf158Q8N1D5 194 aa8.72□□□□□ -1.01
SHMT1-208ENST00000582352 CHCHD5Q9BSY4 110 aa8.71□□□□□ -1.01
SHMT1-208ENST00000582352 MYO18BQ8IUG5 2567 aa8.71□□□□□ -1.02
SHMT1-208ENST00000582352 HIST2H2BDQ6DRA6 164 aa8.71□□□□□ -1.02
SHMT1-208ENST00000582352 BAALC-AS2P0C853 105 aa8.7□□□□□ -1.02
SHMT1-208ENST00000582352 CRPP02741 224 aa8.7□□□□□ -1.02
SHMT1-208ENST00000582352 TMEM243Q9BU79 118 aa8.7□□□□□ -1.02
SHMT1-208ENST00000582352 IMUPQ9GZP8 106 aa8.7□□□□□ -1.02
SHMT1-208ENST00000582352 FAM236AA0A1B0GUQ0 79 aa8.69□□□□□ -1.02
SHMT1-208ENST00000582352 FAM236BA0A1B0GV22 79 aa8.69□□□□□ -1.02
SHMT1-208ENST00000582352 TRAV13-2A0A0B4J235 113 aa8.69□□□□□ -1.02
SHMT1-208ENST00000582352 PPDPFQ9H3Y8 114 aa8.69□□□□□ -1.02
SHMT1-208ENST00000582352 ACACBO00763 2458 aa8.69□□□□□ -1.02
SHMT1-208ENST00000582352 HIST2H2BCQ6DN03 193 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 LINC00643Q86TS7 51 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 FAM218AQ96MZ4 157 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 TRAV25A0A0B4J276 109 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 PF4P02776 101 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 FAM222AQ5U5X8 452 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 SMCR5Q8TEV8 140 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 CR1P17927 2039 aa8.68□□□□□ -1.02
SHMT1-208ENST00000582352 INAFM2P0DMQ5 153 aa8.67□□□□□ -1.02
SHMT1-208ENST00000582352 Q96MF0 132 aa8.67□□□□□ -1.02
SHMT1-208ENST00000582352 NOP10Q9NPE3 64 aaKnown RBP8.67□□□□□ -1.02
SHMT1-208ENST00000582352 CENPEQ02224 2701 aa8.67□□□□□ -1.02
SHMT1-208ENST00000582352 COX7B2Q8TF08 81 aa8.67□□□□□ -1.02
SHMT1-208ENST00000582352 RPL28P46779 137 aaKnown RBP8.66□□□□□ -1.02
SHMT1-208ENST00000582352 MIR7-3HGQ8N6C7 128 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 TOMM7Q9P0U1 55 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 IGSF10Q6WRI0 2623 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms