RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FMC1Q96HJ9 113 aa8.95□□□□□ -0.98
VPS53-218ENST00000575207 CENPXA8MT69 81 aa8.94□□□□□ -0.98
VPS53-218ENST00000575207 CXorf1O96002 111 aa8.94□□□□□ -0.98
VPS53-218ENST00000575207 CNPY1Q3B7I2 92 aa8.94□□□□□ -0.98
VPS53-218ENST00000575207 SEC22CQ9BRL7 303 aa8.94□□□□□ -0.98
VPS53-218ENST00000575207 MUC12Q9UKN1 5478 aa8.93□□□□□ -0.98
VPS53-218ENST00000575207 LTAP01374 205 aa8.93□□□□□ -0.98
VPS53-218ENST00000575207 SPAG11AQ6PDA7 123 aa8.93□□□□□ -0.98
VPS53-218ENST00000575207 SMIM3Q9BZL3 60 aa8.93□□□□□ -0.98
VPS53-218ENST00000575207 IGLV8-61A0A075B6I0 122 aa8.92□□□□□ -0.98
VPS53-218ENST00000575207 NDUFA1O15239 70 aa8.92□□□□□ -0.98
VPS53-218ENST00000575207 BCE1O60756 84 aa8.92□□□□□ -0.98
VPS53-218ENST00000575207 KIR2DL4Q99706 377 aa8.92□□□□□ -0.98
VPS53-218ENST00000575207 HSPB11Q9Y547 144 aa8.92□□□□□ -0.98
VPS53-218ENST00000575207 C1orf196B1AJZ1 125 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 F8WDY8 70 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 H0YIZ8 118 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 TMEM241Q24JQ0 296 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 C10orf25Q5T742 122 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 OR10D4PQ8NGN7 298 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 CDC42SE2Q9NRR3 84 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 UBE2D4Q9Y2X8 147 aa8.91□□□□□ -0.98
VPS53-218ENST00000575207 UBE2G2P60604 165 aa8.9□□□□□ -0.98
VPS53-218ENST00000575207 C5orf38Q86SI9 138 aa8.9□□□□□ -0.98
VPS53-218ENST00000575207 DAND5Q8N907 189 aa8.9□□□□□ -0.98
VPS53-218ENST00000575207 C6orf48Q9UBA6 75 aa8.9□□□□□ -0.98
VPS53-218ENST00000575207 CTRLP40313 264 aa8.89□□□□□ -0.99
VPS53-218ENST00000575207 C9orf129Q5T035 196 aaKnown RBP8.89□□□□□ -0.99
VPS53-218ENST00000575207 ALG5Q9Y673 324 aa8.89□□□□□ -0.99
VPS53-218ENST00000575207 UNQ6190/PRO20217Q6UXQ8 127 aa8.88□□□□□ -0.99
VPS53-218ENST00000575207 TPPP3Q9BW30 176 aa8.87□□□□□ -0.99
VPS53-218ENST00000575207 KRTAP9-8Q9BYQ0 159 aa8.87□□□□□ -0.99
VPS53-218ENST00000575207 NKX6-2Q9C056 277 aaPredicted RBP8.87□□□□□ -0.99
VPS53-218ENST00000575207 LBHQ53QV2 105 aaPredicted RBP8.86□□□□□ -0.99
VPS53-218ENST00000575207 PCOTHQ58A44 107 aa8.86□□□□□ -0.99
VPS53-218ENST00000575207 COX6B2Q6YFQ2 88 aa8.86□□□□□ -0.99
VPS53-218ENST00000575207 ORAOV1Q8WV07 137 aa8.86□□□□□ -0.99
VPS53-218ENST00000575207 C22orf24Q9Y442 160 aa8.86□□□□□ -0.99
VPS53-218ENST00000575207 FAM74A7A6NL05 159 aa8.85□□□□□ -0.99
VPS53-218ENST00000575207 LCE2BO14633 110 aa8.85□□□□□ -0.99
VPS53-218ENST00000575207 TRGC1P0CF51 173 aa8.84□□□□□ -0.99
VPS53-218ENST00000575207 MRPL52Q86TS9 123 aaKnown RBP8.84□□□□□ -0.99
VPS53-218ENST00000575207 NDUFC2-KCTD14E9PQ53 114 aa8.83□□□□□ -1
VPS53-218ENST00000575207 IL7P13232 177 aa8.83□□□□□ -1
VPS53-218ENST00000575207 C3orf22Q8N5N4 141 aa8.83□□□□□ -1
VPS53-218ENST00000575207 GATD1Q8NB37 220 aa8.83□□□□□ -1
VPS53-218ENST00000575207 MRAP2Q96G30 205 aa8.83□□□□□ -1
VPS53-218ENST00000575207 ACTR3CQ9C0K3 210 aaPredicted RBP8.83□□□□□ -1
VPS53-218ENST00000575207 LINC00846Q9NV44 126 aa8.83□□□□□ -1
VPS53-218ENST00000575207 SIX6O95475 246 aa8.82□□□□□ -1
VPS53-218ENST00000575207 C4orf48Q5BLP8 95 aa8.82□□□□□ -1
VPS53-218ENST00000575207 TRAV13-1A0A0B4J241 112 aa8.81□□□□□ -1
VPS53-218ENST00000575207 SDHAF1A6NFY7 115 aa8.81□□□□□ -1
VPS53-218ENST00000575207 MBP02144 154 aa8.81□□□□□ -1
VPS53-218ENST00000575207 IGLC6P0CF74 106 aa8.81□□□□□ -1
VPS53-218ENST00000575207 KRTAP13-1Q8IUC0 172 aa8.81□□□□□ -1
VPS53-218ENST00000575207 RPL39LQ96EH5 51 aaKnown RBP8.81□□□□□ -1
VPS53-218ENST00000575207 NUDT15Q9NV35 164 aa8.81□□□□□ -1
VPS53-218ENST00000575207 NDUFA13Q9P0J0 144 aa8.81□□□□□ -1
VPS53-218ENST00000575207 NDUFA12Q9UI09 145 aa8.81□□□□□ -1
VPS53-218ENST00000575207 LYRM1O43325 122 aa8.8□□□□□ -1
VPS53-218ENST00000575207 AKR1C3P42330 323 aa8.8□□□□□ -1
VPS53-218ENST00000575207 MZT2BQ6NZ67 158 aa8.8□□□□□ -1
VPS53-218ENST00000575207 CYTL1Q9NRR1 136 aa8.8□□□□□ -1
VPS53-218ENST00000575207 I3L3M4 83 aa8.79□□□□□ -1
VPS53-218ENST00000575207 PMCHP20382 165 aa8.79□□□□□ -1
VPS53-218ENST00000575207 ATP6V0CP27449 155 aa8.79□□□□□ -1
VPS53-218ENST00000575207 UBE2AP49459 152 aa8.79□□□□□ -1
VPS53-218ENST00000575207 PACRGQ96M98 296 aaPredicted RBP8.79□□□□□ -1
VPS53-218ENST00000575207 TCEAL7Q9BRU2 100 aa8.79□□□□□ -1
VPS53-218ENST00000575207 MRPL55Q7Z7F7 128 aaKnown RBP8.78□□□□□ -1
VPS53-218ENST00000575207 PSMG3Q9BT73 122 aaPredicted RBP8.78□□□□□ -1
VPS53-218ENST00000575207 RNASE13Q5GAN3 156 aaKnown RBP8.77□□□□□ -1.01
VPS53-218ENST00000575207 STOML3Q8TAV4 291 aa8.77□□□□□ -1.01
VPS53-218ENST00000575207 TRBV30A0A0K0K1B3 111 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 FAM240BA0A1B0GVZ2 78 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 INMT-MINDY4F8WBC2 141 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 H2AFB2P0C5Z0 115 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 DEFA1P59665 94 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 SERF2P84101 59 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 PPP1R1CQ8WVI7 109 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 TP73-AS1Q9UF72 201 aa8.76□□□□□ -1.01
VPS53-218ENST00000575207 KRTAP19-6Q3LI70 58 aa8.75□□□□□ -1.01
VPS53-218ENST00000575207 BAGE2Q86Y30 109 aa8.75□□□□□ -1.01
VPS53-218ENST00000575207 CCDC32Q9BV29 185 aa8.75□□□□□ -1.01
VPS53-218ENST00000575207 TNFSF18Q9UNG2 199 aa8.75□□□□□ -1.01
VPS53-218ENST00000575207 F2Z2F3 143 aa8.74□□□□□ -1.01
VPS53-218ENST00000575207 PLA2G10O15496 165 aa8.74□□□□□ -1.01
VPS53-218ENST00000575207 ENKURQ8TC29 256 aa8.74□□□□□ -1.01
VPS53-218ENST00000575207 TMEM242Q9NWH2 141 aa8.74□□□□□ -1.01
VPS53-218ENST00000575207 RPL37AP8A6NKH3 93 aa8.73□□□□□ -1.01
VPS53-218ENST00000575207 S100A9P06702 114 aaKnown RBP8.73□□□□□ -1.01
VPS53-218ENST00000575207 PET100P0DJ07 73 aa8.73□□□□□ -1.01
VPS53-218ENST00000575207 ZNF726P1Q15940 193 aa8.73□□□□□ -1.01
VPS53-218ENST00000575207 S100ZQ8WXG8 99 aa8.73□□□□□ -1.01
VPS53-218ENST00000575207 MARVELD1Q9BSK0 173 aa8.73□□□□□ -1.01
VPS53-218ENST00000575207 CTXND1A0A1B0GTU2 59 aa8.72□□□□□ -1.01
VPS53-218ENST00000575207 C7orf77A4D0Y5 90 aa8.72□□□□□ -1.01
VPS53-218ENST00000575207 MPC2O95563 127 aa8.72□□□□□ -1.01
VPS53-218ENST00000575207 CST9LP1Q5W188 147 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms