RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PCP4L1A6NKN8 68 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 REG3AQ06141 175 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 BAGE3Q86Y29 109 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 PYGO1Q9Y3Y4 419 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 MIAQ16674 131 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 RMI2Q96E14 147 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 Q9HAA7 133 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 CDC42SE2Q9NRR3 84 aa11.48□□□□□ -0.57
NUP88-210ENST00000574867 ENHOQ6UWT2 76 aa11.47□□□□□ -0.57
NUP88-210ENST00000574867 ZNF664Q8N3J9 261 aa11.47□□□□□ -0.57
NUP88-210ENST00000574867 TOMM6Q96B49 74 aa11.47□□□□□ -0.57
NUP88-210ENST00000574867 NPSP0C0P6 89 aa11.47□□□□□ -0.57
NUP88-210ENST00000574867 MRPS36P82909 103 aaKnown RBP11.47□□□□□ -0.57
NUP88-210ENST00000574867 CLPSL2Q6UWE3 100 aa11.46□□□□□ -0.57
NUP88-210ENST00000574867 HIST1H2BKO60814 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BJP06899 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BOP23527 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BBP33778 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BDP58876 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BCP62807 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST2H2BEQ16778 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.45□□□□□ -0.58
NUP88-210ENST00000574867 Q6ZUT4 128 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BHQ93079 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BNQ99877 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 HIST1H2BMQ99879 126 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 TM2D2Q9BX73 214 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 COX11Q9Y6N1 276 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 C1orf196B1AJZ1 125 aa11.45□□□□□ -0.58
NUP88-210ENST00000574867 TRAV8-4A0A0B4J246 113 aa11.44□□□□□ -0.58
NUP88-210ENST00000574867 HBDP02042 147 aa11.44□□□□□ -0.58
NUP88-210ENST00000574867 Q6ZRN7 208 aaPredicted RBP11.44□□□□□ -0.58
NUP88-210ENST00000574867 TIMM17AQ99595 171 aa11.44□□□□□ -0.58
NUP88-210ENST00000574867 C1orf43Q9BWL3 253 aa11.44□□□□□ -0.58
NUP88-210ENST00000574867 ERASQ7Z444 233 aa11.44□□□□□ -0.58
NUP88-210ENST00000574867 IGLV4-3A0A075B6K6 122 aa11.43□□□□□ -0.58
NUP88-210ENST00000574867 IGIPA6NJ69 53 aa11.43□□□□□ -0.58
NUP88-210ENST00000574867 HSBP1O75506 76 aa11.43□□□□□ -0.58
NUP88-210ENST00000574867 TMEM141Q96I45 108 aa11.43□□□□□ -0.58
NUP88-210ENST00000574867 IGKV2D-24A0A075B6R9 120 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 A0A096LNJ9 63 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 RTL8CO15255 209 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 SERF1AO75920 110 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 PAPPA-AS1Q5QFB9 102 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 Q6ZN92 141 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 SCGB3A1Q96QR1 104 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 RYR3Q15413 4870 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 FAM104AQ969W3 186 aa11.42□□□□□ -0.58
NUP88-210ENST00000574867 IGKV3OR2-268A0A0C4DH90 116 aa11.41□□□□□ -0.58
NUP88-210ENST00000574867 PSCAO43653 123 aa11.41□□□□□ -0.58
NUP88-210ENST00000574867 CCL25O15444 150 aa11.4□□□□□ -0.58
NUP88-210ENST00000574867 LINC00310P59036 64 aa11.4□□□□□ -0.58
NUP88-210ENST00000574867 PMCHL1Q16048 86 aa11.4□□□□□ -0.58
NUP88-210ENST00000574867 RNASE13Q5GAN3 156 aaKnown RBP11.4□□□□□ -0.58
NUP88-210ENST00000574867 LINC00336Q6ZUF6 198 aa11.4□□□□□ -0.58
NUP88-210ENST00000574867 OPRPNQ99935 248 aaPredicted RBP11.4□□□□□ -0.58
NUP88-210ENST00000574867 TEX43Q6ZNM6 134 aa11.4□□□□□ -0.58
NUP88-210ENST00000574867 LINC00959A0A1B0GUT2 108 aa11.39□□□□□ -0.59
NUP88-210ENST00000574867 SS18Q15532 418 aa11.39□□□□□ -0.59
NUP88-210ENST00000574867 IGLV10-54A0A075B6I4 117 aa11.39□□□□□ -0.59
NUP88-210ENST00000574867 PDZD11Q5EBL8 140 aa11.39□□□□□ -0.59
NUP88-210ENST00000574867 C2orf88Q9BSF0 95 aa11.39□□□□□ -0.59
NUP88-210ENST00000574867 IFITM10A6NMD0 228 aa11.38□□□□□ -0.59
NUP88-210ENST00000574867 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.38□□□□□ -0.59
NUP88-210ENST00000574867 AKR1D1P51857 326 aa11.38□□□□□ -0.59
NUP88-210ENST00000574867 VCX2Q9H322 139 aa11.38□□□□□ -0.59
NUP88-210ENST00000574867 S100A12P80511 92 aa11.37□□□□□ -0.59
NUP88-210ENST00000574867 CHCHD10Q8WYQ3 142 aaPredicted RBP11.37□□□□□ -0.59
NUP88-210ENST00000574867 AMELXQ99217 191 aa11.37□□□□□ -0.59
NUP88-210ENST00000574867 TRAV13-1A0A0B4J241 112 aa11.37□□□□□ -0.59
NUP88-210ENST00000574867 ATP5LO75964 103 aa11.37□□□□□ -0.59
NUP88-210ENST00000574867 C12orf57Q99622 126 aa11.37□□□□□ -0.59
NUP88-210ENST00000574867 DNAH2Q9P225 4427 aa11.36□□□□□ -0.59
NUP88-210ENST00000574867 COA6Q5JTJ3 125 aaKnown RBP11.36□□□□□ -0.59
NUP88-210ENST00000574867 KRTAP26-1Q6PEX3 210 aa11.36□□□□□ -0.59
NUP88-210ENST00000574867 LINC00173Q6ZV60 143 aa11.36□□□□□ -0.59
NUP88-210ENST00000574867 FAM19A2Q8N3H0 131 aa11.36□□□□□ -0.59
NUP88-210ENST00000574867 PRSS29PA6NIE9 313 aa11.35□□□□□ -0.59
NUP88-210ENST00000574867 NUPR1O60356 82 aa11.34□□□□□ -0.59
NUP88-210ENST00000574867 XCL1P47992 114 aa11.34□□□□□ -0.59
NUP88-210ENST00000574867 CD164L2Q6UWJ8 174 aa11.34□□□□□ -0.59
NUP88-210ENST00000574867 BAALCQ8WXS3 180 aa11.34□□□□□ -0.59
NUP88-210ENST00000574867 GAGE12HA6NDE8 117 aa11.33□□□□□ -0.6
NUP88-210ENST00000574867 NDUFA6P56556 154 aa11.33□□□□□ -0.6
NUP88-210ENST00000574867 TNP2Q05952 138 aa11.33□□□□□ -0.6
NUP88-210ENST00000574867 FRAS1Q86XX4 4008 aa11.33□□□□□ -0.6
NUP88-210ENST00000574867 UBE2D1P51668 147 aa11.32□□□□□ -0.6
NUP88-210ENST00000574867 PMVKQ15126 192 aa11.32□□□□□ -0.6
NUP88-210ENST00000574867 MAPKAPK5-AS1Q8N8E1 139 aa11.32□□□□□ -0.6
NUP88-210ENST00000574867 LEPROTL1O95214 131 aa11.32□□□□□ -0.6
NUP88-210ENST00000574867 FOXI1Q12951 378 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 ZC2HC1BQ5TFG8 222 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 IFI27L1Q96BM0 104 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 A0A087WTM6 91 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 LRCOL1A6NCL2 159 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 EREGO14944 169 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 SEC11AP67812 179 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 FAM19A3Q7Z5A8 133 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 CST9LQ9H4G1 147 aa11.31□□□□□ -0.6
NUP88-210ENST00000574867 HSPB8Q9UJY1 196 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms