RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 ZNF861PO60384 105 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 IGLV7-43P04211 117 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 COL8A2P25067 703 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 ERHP84090 104 aaKnown RBP2.06□□□□□ -2.08
NUP88-209ENST00000574855 C1orf134Q5TEV5 83 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 FAM19A2Q8N3H0 131 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 LY96Q9Y6Y9 160 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 SDK2Q58EX2 2172 aa2.06□□□□□ -2.08
NUP88-209ENST00000574855 TECTAO75443 2155 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 IGKV1D-17A0A075B6S4 117 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 LOC107984156A0A0G2JMH3 177 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 IGLC7A0M8Q6 106 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 ZNF705FA8MVS1 300 aaPredicted RBP2.05□□□□□ -2.08
NUP88-209ENST00000574855 DEFB108AA8MXU0 73 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 C16orf90A8MZG2 172 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 F8W1H4 67 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 KRTAP10-1P60331 282 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 UBE2L3P68036 154 aaKnown RBP2.05□□□□□ -2.08
NUP88-209ENST00000574855 EIF4EBP1Q13541 118 aaPredicted RBP2.05□□□□□ -2.08
NUP88-209ENST00000574855 C5orf38Q86SI9 138 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 ARL17AQ8IVW1 177 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 Q8NAQ8 132 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 DEFB108BQ8NET1 73 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 UBALD1Q8TB05 177 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 SMIM7Q9BQ49 75 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 SCRT1Q9BWW7 348 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 DYNLRB1Q9NP97 96 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 MINOS1-NBL1R4GNA1 71 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 CEP290O15078 2479 aa2.05□□□□□ -2.08
NUP88-209ENST00000574855 A0A1B0GU33 70 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 TRANK1O15050 2925 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 GYPAP02724 150 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 CRPP02741 224 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 MDKP21741 143 aaPredicted RBP2.04□□□□□ -2.08
NUP88-209ENST00000574855 ASIPP42127 132 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 KNTC1P50748 2209 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 ATP5EP56381 51 aaPredicted RBP2.04□□□□□ -2.08
NUP88-209ENST00000574855 CCL8P80075 99 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 ADIRFQ15847 76 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 RPL39P5Q59GN2 51 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 LCE1CQ5T751 118 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 LCE1BQ5T7P3 118 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 HEPN1Q6WQI6 88 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 CYP2G1PQ6ZSU1 146 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 LINC00269Q8N2A0 174 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 ST20-AS1Q8NBB2 130 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 MED12Q93074 2177 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 GAFA1Q96PS6 74 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 PMCHL2Q9BQD1 86 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 C20orf78Q9BR46 151 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 TMEM167BQ9NRX6 74 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 TMEM14BQ9NUH8 114 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 KAAG1Q9UBP8 84 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 UQCR10Q9UDW1 63 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 ARL2-SNX15V9GYD0 113 aa2.04□□□□□ -2.08
NUP88-209ENST00000574855 MKI67P46013 3256 aaKnown RBP2.03□□□□□ -2.08
NUP88-209ENST00000574855 hADV29S1A0JD25 119 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 IGKCP01834 107 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 SAA2P0DJI9 122 aaPredicted RBP2.03□□□□□ -2.08
NUP88-209ENST00000574855 MGST1P10620 155 aaKnown RBP2.03□□□□□ -2.08
NUP88-209ENST00000574855 CBLN1P23435 193 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 GCHFRP30047 84 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 RBM3P98179 157 aaKnown RBP2.03□□□□□ -2.08
NUP88-209ENST00000574855 PRCDQ00LT1 54 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 TFF3Q07654 80 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 ELOBQ15370 118 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 SPINK9Q5DT21 86 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 S100A7L2Q5SY68 101 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 ZNF833PQ6ZTB9 187 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 TRIOBPQ9H2D6 2365 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 DOCK10Q96BY6 2186 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 MUC4Q99102 2169 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 PCNX2A6NKB5 2137 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 KIAA2026Q5HYC2 2103 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 ARHGAP32A7KAX9 2087 aa2.03□□□□□ -2.08
NUP88-209ENST00000574855 RTTNQ86VV8 2226 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 MYO7BQ6PIF6 2116 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 TRBV7-7A0A0K0K1E9 115 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 IBA57-AS1B1ANH7 110 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 TFF1P04155 84 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 IL4P05112 153 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 ARL14EPLP0DKL9 152 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 PLGLAQ15195 96 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 C15orf53Q8NAA6 179 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 OR8B3Q8NGG8 313 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 TMEM167AQ8TBQ9 72 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 DYNLRB2Q8TF09 96 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 LEAP2Q969E1 77 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 C20orf166-AS1Q96NR2 134 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 OR8B2Q96RD0 313 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 MGST2Q99735 147 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 C14orf132Q9NPU4 83 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 NDUFA4L2Q9NRX3 87 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 SHANK1Q9Y566 2161 aa2.02□□□□□ -2.09
NUP88-209ENST00000574855 CNTRLQ7Z7A1 2325 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 C5orf42Q9H799 3197 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 DNAJC13O75165 2243 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 TCRBV4S1A1TA0A5B7 111 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 NUPR1O60356 82 aa2.01□□□□□ -2.09
NUP88-209ENST00000574855 CCKP06307 115 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms