RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 RPL35P42766 123 aaKnown RBP5.97□□□□□ -1.45
CIITA-208ENST00000572665 RBX1P62877 108 aa5.97□□□□□ -1.45
CIITA-208ENST00000572665 IQCJQ1A5X6 159 aa5.97□□□□□ -1.45
CIITA-208ENST00000572665 NOTCH2NLQ7Z3S9 236 aa5.97□□□□□ -1.45
CIITA-208ENST00000572665 LINC00269Q8N2A0 174 aa5.97□□□□□ -1.45
CIITA-208ENST00000572665 C9orf163Q8N9P6 203 aa5.97□□□□□ -1.45
CIITA-208ENST00000572665 FER1L6-AS1Q8NA97 138 aa5.97□□□□□ -1.45
CIITA-208ENST00000572665 SSTP61278 116 aa5.96□□□□□ -1.46
CIITA-208ENST00000572665 REG3AQ06141 175 aa5.96□□□□□ -1.46
CIITA-208ENST00000572665 FAM210AQ96ND0 272 aa5.96□□□□□ -1.46
CIITA-208ENST00000572665 TPPP3Q9BW30 176 aa5.96□□□□□ -1.46
CIITA-208ENST00000572665 PYGO1Q9Y3Y4 419 aa5.96□□□□□ -1.46
CIITA-208ENST00000572665 TRBV20OR9-2A0A075B6H5 130 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 MUC21A0A0G2JKD1 596 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 MUC21A0A140T8X8 626 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 TMEM250H0YL14 139 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 GNG4P50150 75 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 RASL11AQ6T310 242 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 CLPSL2Q6UWE3 100 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 NTM-AS1Q6ZSK4 140 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 OR2D3Q8NGH3 330 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 DPH3Q96FX2 82 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 ALKBH7Q9BT30 221 aaPredicted RBP5.95□□□□□ -1.46
CIITA-208ENST00000572665 TMEM243Q9BU79 118 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 KIF25-AS1Q9Y6Z4 181 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 HERC1Q15751 4861 aa5.95□□□□□ -1.46
CIITA-208ENST00000572665 IGHV3-64A0A075B6Q5 118 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 M0QY20 66 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 CNBPP62633 177 aaKnown RBP5.94□□□□□ -1.46
CIITA-208ENST00000572665 IFITM2Q01629 132 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 SRSF9Q13242 221 aaKnown RBP eCLIP5.94□□□□□ -1.46
CIITA-208ENST00000572665 CENPWQ5EE01 88 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 ADAMTSL4-AS1Q5T5F5 129 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 RNF185Q96GF1 192 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 PGLYRP4Q96LB8 373 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 DPH3P1Q9H4G8 78 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 NIT2Q9NQR4 276 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 MED9Q9NWA0 146 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 MYCBP2O75592 4640 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 FAT1Q14517 4588 aa5.94□□□□□ -1.46
CIITA-208ENST00000572665 A0A087X002 238 aa5.93□□□□□ -1.46
CIITA-208ENST00000572665 IGLC6P0CF74 106 aa5.93□□□□□ -1.46
CIITA-208ENST00000572665 KRTAP10-4P60372 401 aaPredicted RBP5.93□□□□□ -1.46
CIITA-208ENST00000572665 COTL1Q14019 142 aa5.93□□□□□ -1.46
CIITA-208ENST00000572665 SMIM15Q7Z3B0 74 aa5.93□□□□□ -1.46
CIITA-208ENST00000572665 EIF5A2Q9GZV4 153 aaKnown RBP5.93□□□□□ -1.46
CIITA-208ENST00000572665 PKIGQ9Y2B9 76 aa5.93□□□□□ -1.46
CIITA-208ENST00000572665 IGLV10-54A0A075B6I4 117 aa5.92□□□□□ -1.46
CIITA-208ENST00000572665 RAB19A4D1S5 217 aa5.92□□□□□ -1.46
CIITA-208ENST00000572665 C19orf71A6NCJ1 209 aa5.92□□□□□ -1.46
CIITA-208ENST00000572665 Q6ZRU5 148 aa5.92□□□□□ -1.46
CIITA-208ENST00000572665 C20orf203Q8NBC4 194 aa5.92□□□□□ -1.46
CIITA-208ENST00000572665 SMDT1Q9H4I9 107 aa5.92□□□□□ -1.46
CIITA-208ENST00000572665 C9JQL5 133 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 SRP19P09132 144 aaKnown RBP5.91□□□□□ -1.46
CIITA-208ENST00000572665 RAB14P61106 215 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 CLLU1Q5K131 121 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 AMMECR1LQ6DCA0 310 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 KRTAP26-1Q6PEX3 210 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 SDIM1Q6ZPB5 146 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 C7orf33Q8WU49 177 aa5.91□□□□□ -1.46
CIITA-208ENST00000572665 H7C423 109 aa5.9□□□□□ -1.46
CIITA-208ENST00000572665 K7EN84 100 aa5.9□□□□□ -1.46
CIITA-208ENST00000572665 NCR2O95944 276 aa5.9□□□□□ -1.46
CIITA-208ENST00000572665 NTF3P20783 257 aa5.9□□□□□ -1.46
CIITA-208ENST00000572665 CIRBPQ14011 172 aaKnown RBP5.9□□□□□ -1.46
CIITA-208ENST00000572665 LYZL1Q6UWQ5 148 aa5.9□□□□□ -1.46
CIITA-208ENST00000572665 MT3P25713 68 aa5.89□□□□□ -1.47
CIITA-208ENST00000572665 CTRLP40313 264 aa5.89□□□□□ -1.47
CIITA-208ENST00000572665 PEA15Q15121 130 aa5.89□□□□□ -1.47
CIITA-208ENST00000572665 C2orf48Q96LS8 159 aa5.89□□□□□ -1.47
CIITA-208ENST00000572665 DNAH8Q96JB1 4490 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 IGLV4-60A0A075B6I1 120 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 FAM74A3Q4VXF1 159 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 LINC01551Q86U37 167 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 BORCS7Q96B45 105 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 BTF3L4Q96K17 158 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 FAM218AQ96MZ4 157 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 SMIM7Q9BQ49 75 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 CNFNQ9BYD5 112 aa5.88□□□□□ -1.47
CIITA-208ENST00000572665 RPP21Q9H633 154 aaKnown RBP5.88□□□□□ -1.47
CIITA-208ENST00000572665 ZNF727A8MUV8 499 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 APCSP02743 223 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 ZNF25P17030 456 aaPredicted RBP5.87□□□□□ -1.47
CIITA-208ENST00000572665 RPS10P46783 165 aaKnown RBP5.87□□□□□ -1.47
CIITA-208ENST00000572665 CEBPGP53567 150 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 RNASEKQ6P5S7 137 aaKnown RBP5.87□□□□□ -1.47
CIITA-208ENST00000572665 FAM231DQ6ZW35 169 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 SPACA4Q8TDM5 124 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 TMEM101Q96IK0 257 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 LINC00474Q9P2X8 69 aa5.87□□□□□ -1.47
CIITA-208ENST00000572665 A0A087WZ39 114 aa5.86□□□□□ -1.47
CIITA-208ENST00000572665 IGKV3OR2-268A0A0C4DH90 116 aa5.86□□□□□ -1.47
CIITA-208ENST00000572665 Q6ZRP5 223 aa5.86□□□□□ -1.47
CIITA-208ENST00000572665 RNASE7Q9H1E1 156 aaKnown RBP5.86□□□□□ -1.47
CIITA-208ENST00000572665 A8MWL6 223 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 I3L3M4 83 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 PMCHP20382 165 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 SMAGPQ0VAQ4 97 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 TMEM241Q24JQ0 296 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms