RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MIR17HGQ75NE6 70 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 PPDPFLQ8WWR9 84 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 RNASE7Q9H1E1 156 aaKnown RBP4.57□□□□□ -1.68
VPS53-213ENST00000572334 TRGV2A0A075B6R0 118 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 KRTAP9-6A0A140TA67 174 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 E9PLD3 99 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 M0QXV9 152 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 PEX7O00628 323 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 SNCGO76070 127 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 NXPH4O95158 308 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 IGHV3-53P01767 116 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 HBDP02042 147 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 DNAH10OSP0CZ25 163 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 RNASE4P34096 147 aaKnown RBP4.56□□□□□ -1.68
VPS53-213ENST00000572334 CAMPP49913 170 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 LYPD5Q6UWN5 251 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 C2orf91Q6ZV80 131 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 GATD1Q8NB37 220 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 FXYD5Q96DB9 178 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 TM2D2Q9BX73 214 aa4.56□□□□□ -1.68
VPS53-213ENST00000572334 SRRM2Q9UQ35 2752 aaKnown RBP4.55□□□□□ -1.68
VPS53-213ENST00000572334 IGHV1OR15-1A0A075B7D0 117 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 A0A1B0GUT8 65 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 A0A1B0GWB2 263 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 PAX4O43316 350 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 KRTAP10-1P60331 282 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 UBE2L3P68036 154 aaKnown RBP4.55□□□□□ -1.68
VPS53-213ENST00000572334 FOXI1Q12951 378 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 GAGE2BQ13066 116 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 GAGE2EQ4V326 116 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 LYPD1Q8N2G4 141 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 Q8TAT8 98 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 RAB37Q96AX2 223 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 C8orf49Q96NF6 230 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 MDFICQ9P1T7 246 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 GAGE2DQ9UEU5 116 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 PRO0255Q9UI72 69 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 ICOSQ9Y6W8 199 aa4.55□□□□□ -1.68
VPS53-213ENST00000572334 A0A087WTM6 91 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 TRBV6-1A0A0K0K1D8 114 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 LINC01549A6NIU2 74 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 K7EQD1 137 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 IFITM1P13164 125 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 EVI2AP22794 236 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 FOXA3P55318 350 aaPredicted RBP4.54□□□□□ -1.68
VPS53-213ENST00000572334 C5orf47Q569G3 176 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 WFDC10BQ8IUB3 73 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 CEND1Q8N111 149 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 PAXXQ9BUH6 204 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 PSG8Q9UQ74 426 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 HHLA3Q9XRX5 114 aa4.54□□□□□ -1.68
VPS53-213ENST00000572334 RBAKDNA6NC62 111 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 A8MWV9 139 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 EPM2AB3EWF7 344 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 SCGB1C2P0DMR2 95 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 FGF6P10767 208 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 NMUP48645 174 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 ZNF138P52744 262 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 TMEM78Q5T7P6 136 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 Q6ZUT4 128 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 ORMDL3Q8N138 153 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 SYT8Q8NBV8 401 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 RASL10AQ92737 203 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 IFI27L1Q96BM0 104 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 CHAC1Q9BUX1 264 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 AAMDCQ9H7C9 122 aa4.53□□□□□ -1.68
VPS53-213ENST00000572334 NXT2Q9NPJ8 142 aaKnown RBP4.53□□□□□ -1.68
VPS53-213ENST00000572334 LOC100131303A0A0U1RQF7 123 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 LRCOL1A6NCL2 159 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 IGLV2-8P01709 118 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 PLNP26678 52 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 RPL32P62910 135 aaKnown RBP4.52□□□□□ -1.69
VPS53-213ENST00000572334 ZNF415Q09FC8 603 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 ETDBQ3ZM63 59 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 TEN1Q86WV5 123 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 NHP2Q9NX24 153 aaKnown RBP4.52□□□□□ -1.69
VPS53-213ENST00000572334 EPDR1Q9UM22 224 aa4.52□□□□□ -1.69
VPS53-213ENST00000572334 IGHV3-16A0A0C4DH30 117 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 FABP5P3A8MUU1 101 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 GGTLC3B5MD39 225 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 RHODO00212 210 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 GNRH2O43555 120 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 DPM2O94777 84 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 IGKCP01834 107 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 INAFM2P0DMQ5 153 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 GYPEP15421 78 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 HERV-K104P63124 156 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 HAMPP81172 84 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 Q5VSD8 79 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 OR13C6PQ8NH95 151 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 HIST1H4GQ99525 98 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 MSRB1Q9NZV6 116 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 LENEPQ9Y5L5 61 aa4.51□□□□□ -1.69
VPS53-213ENST00000572334 TRAV4A0A0B4J268 109 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 TRGV4A0A0C4DH28 118 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 C19orf71A6NCJ1 209 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 B5MCH6 92 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 K7EMI3 77 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 LTAP01374 205 aa4.5□□□□□ -1.69
VPS53-213ENST00000572334 SMR3BP02814 79 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms